6U1S | pdb_00006u1s

Cryo-EM structure of a de novo designed 16-helix transmembrane nanopore, TMHC8_R.

PDB DOI: https://doi.org/10.2210/pdb6U1S/pdb
EM Map EMD-20613: EMDB EMDataResource

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-08-16 Released: 2020-08-19
Deposition Author(s): Johnson, M.J., Reggiano, G., Xu, C., Lu, P., Hsia, Y., Brunette, T.J., DiMaio, F., Baker, D., Kollman, J.
Funding Organization(s): Howard Hughes Medical Institute (HHMI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6U1S

This is version 1.1 of the entry. See complete history.

Literature

Computational Design of Transmembrane Channels

Xu, C., Lu, P., Gamal El-Din, T.M., Pei, X., Johnson, M.J., Uyeda, A., Bick, M.J., Jiang, D., Hsia, Y., Brunette, T.J., Ma, D., Lynch, E., Boyken, S.E., Huang, P., Stewart, L., Kollman, J.K., Luisi, B.F., Matsuura, T., Catterall, W.A., Baker, D.

To be published.

Macromolecule Content

Total Structure Weight: 280.01 kDa
Atom Count: 19,640
Modeled Residue Count: 2,480
Deposited Residue Count: 2,480
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
de novo designed 16-helix transmembrane nanopore, TMHC8_R	A B C [auth D] D [auth F] E [auth H] A, B, C [auth D], D [auth F], E [auth H], F [auth J], G [auth L], H [auth N]	310	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 7.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	Rosetta

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-08-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Howard Hughes Medical Institute (HHMI)	United States	--

Revision History (Full details and data files)

Version 1.0: 2020-08-19
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.