6TXN

Crystal structure of thermotoga maritima Ferritin in apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of thermotoga maritima Ferritin in apo form with magnesium bound

Grudnik, P.Wilk, P.Kumar, M.Heddle, J.Chakraborti, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FerritinA, B, C, D, E, F, G, H164Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: TM_1128
EC: 1.16.3.2
UniProt
Find proteins for Q9X0L2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9X0L2 
Go to UniProtKB:  Q9X0L2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LFA (Subject of Investigation/LOI)
Query on LFA

Download Ideal Coordinates CCD File 
EA [auth E], LA [auth G], P [auth B], Z [auth D]EICOSANE
C20 H42
CBFCDTFDPHXCNY-UHFFFAOYSA-N
 Ligand Interaction
SO4 (Subject of Investigation/LOI)
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth D] , CA [auth E] , FA [auth E] , HA [auth F] , IA [auth F] , J [auth A] , L [auth B] , N [auth B] , 
AA [auth D], CA [auth E], FA [auth E], HA [auth F], IA [auth F], J [auth A], L [auth B], N [auth B], NA [auth H], Q [auth B], U [auth C], V [auth C]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL (Subject of Investigation/LOI)
Query on GOL

Download Ideal Coordinates CCD File 
DA [auth E] , I [auth A] , KA [auth G] , M [auth B] , O [auth B] , OA [auth H] , S [auth C] , T [auth C] , 
DA [auth E], I [auth A], KA [auth G], M [auth B], O [auth B], OA [auth H], S [auth C], T [auth C], X [auth D], Y [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG (Subject of Investigation/LOI)
Query on MG

Download Ideal Coordinates CCD File 
BA [auth D], GA [auth E], JA [auth F], K [auth A], MA [auth G], PA [auth H], R [auth B], W [auth C]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 176.02α = 90
b = 176.02β = 90
c = 356.27γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Foundation for Polish SciencePolandHoming/2017-3/22

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-28
    Type: Initial release