6TXL

Crystal structure of thermotoga maritima E65Q Ferritin

DOI: 10.2210/pdb6TXL/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-01-14 Released: 2021-07-28
Deposition Author(s): Wilk, P., Grudnik, P., Kumar, M., Heddle, J., Chakraborti, S.
Funding Organization(s): Foundation for Polish Science

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.222
R-Value Work: 0.193
R-Value Observed: 0.193

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of thermotoga maritima E65Q Ferritin

Wilk, P., Grudnik, P., Kumar, M., Heddle, J., Chakraborti, S.

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin	A, B, C, D, E, F, G, H	164	Thermotoga maritima MSB8	Mutation(s): 1 Gene Names: TM_1128 EC: 1.16.3.2
UniProt
Find proteins for Q9X0L2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0L2 Go to UniProtKB: Q9X0L2
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LFA (Subject of Investigation/LOI) Query on LFA Download Ideal Coordinates CCD File SDF format, chain IB [auth H] SDF format, chain SA [auth E] SDF format, chain EA [auth C] SDF format, chain X [auth B] MOL2 format, chain IB [auth H] MOL2 format, chain SA [auth E] MOL2 format, chain EA [auth C] MOL2 format, chain X [auth B]	EA [auth C], IB [auth H], SA [auth E], X [auth B]	EICOSANE C₂₀ H₄₂ CBFCDTFDPHXCNY-UHFFFAOYSA-N		Ligand Interaction
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain DB [auth G] SDF format, chain FA [auth C] SDF format, chain FB [auth H] SDF format, chain GA [auth C] SDF format, chain J [auth A] SDF format, chain NA [auth D] SDF format, chain P [auth A] SDF format, chain QA [auth E] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain VA [auth F] SDF format, chain AA [auth B] SDF format, chain BB [auth G] SDF format, chain CB [auth G] SDF format, chain HA [auth C] SDF format, chain JA [auth D] SDF format, chain JB [auth H] SDF format, chain MA [auth D] SDF format, chain N [auth A] SDF format, chain O [auth A] SDF format, chain OA [auth D] SDF format, chain Q [auth A] SDF format, chain TA [auth E] SDF format, chain V [auth B] SDF format, chain XA [auth F] SDF format, chain Y [auth B] SDF format, chain Z [auth B] MOL2 format, chain DB [auth G] MOL2 format, chain FA [auth C] MOL2 format, chain FB [auth H] MOL2 format, chain GA [auth C] MOL2 format, chain J [auth A] MOL2 format, chain NA [auth D] MOL2 format, chain P [auth A] MOL2 format, chain QA [auth E] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain VA [auth F] MOL2 format, chain AA [auth B] MOL2 format, chain BB [auth G] MOL2 format, chain CB [auth G] MOL2 format, chain HA [auth C] MOL2 format, chain JA [auth D] MOL2 format, chain JB [auth H] MOL2 format, chain MA [auth D] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] MOL2 format, chain OA [auth D] MOL2 format, chain Q [auth A] MOL2 format, chain TA [auth E] MOL2 format, chain V [auth B] MOL2 format, chain XA [auth F] MOL2 format, chain Y [auth B] MOL2 format, chain Z [auth B]	AA [auth B] , BB [auth G] , CB [auth G] , DB [auth G] , FA [auth C] , FB [auth H] , GA [auth C] , HA [auth C] , AA [auth B], BB [auth G], CB [auth G], DB [auth G], FA [auth C], FB [auth H], GA [auth C], HA [auth C], J [auth A], JA [auth D], JB [auth H], MA [auth D], N [auth A], NA [auth D], O [auth A], OA [auth D], P [auth A], Q [auth A], QA [auth E], S [auth B], T [auth B], TA [auth E], V [auth B], VA [auth F], XA [auth F], Y [auth B], Z [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain GB [auth H] SDF format, chain HB [auth H] SDF format, chain M [auth A] SDF format, chain AB [auth G] SDF format, chain CA [auth C] SDF format, chain DA [auth C] SDF format, chain K [auth A] SDF format, chain KA [auth D] SDF format, chain L [auth A] SDF format, chain LA [auth D] SDF format, chain RA [auth E] SDF format, chain U [auth B] SDF format, chain W [auth B] SDF format, chain WA [auth F] SDF format, chain ZA [auth G] MOL2 format, chain GB [auth H] MOL2 format, chain HB [auth H] MOL2 format, chain M [auth A] MOL2 format, chain AB [auth G] MOL2 format, chain CA [auth C] MOL2 format, chain DA [auth C] MOL2 format, chain K [auth A] MOL2 format, chain KA [auth D] MOL2 format, chain L [auth A] MOL2 format, chain LA [auth D] MOL2 format, chain RA [auth E] MOL2 format, chain U [auth B] MOL2 format, chain W [auth B] MOL2 format, chain WA [auth F] MOL2 format, chain ZA [auth G]	AB [auth G] , CA [auth C] , DA [auth C] , GB [auth H] , HB [auth H] , K [auth A] , KA [auth D] , L [auth A] , AB [auth G], CA [auth C], DA [auth C], GB [auth H], HB [auth H], K [auth A], KA [auth D], L [auth A], LA [auth D], M [auth A], RA [auth E], U [auth B], W [auth B], WA [auth F], ZA [auth G]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain EB [auth H] SDF format, chain I [auth A] SDF format, chain PA [auth E] SDF format, chain R [auth B] SDF format, chain UA [auth F] SDF format, chain BA [auth C] SDF format, chain IA [auth D] SDF format, chain YA [auth G] MOL2 format, chain EB [auth H] MOL2 format, chain I [auth A] MOL2 format, chain PA [auth E] MOL2 format, chain R [auth B] MOL2 format, chain UA [auth F] MOL2 format, chain BA [auth C] MOL2 format, chain IA [auth D] MOL2 format, chain YA [auth G]	BA [auth C], EB [auth H], I [auth A], IA [auth D], PA [auth E], R [auth B], UA [auth F], YA [auth G]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction