6TPI

EnvC bound to the FtsX periplasmic domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.218 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Insights into bacterial cell division from a structure of EnvC bound to the FtsX periplasmic domain.

Cook, J.Baverstock, T.C.McAndrew, M.B.L.Stansfeld, P.J.Roper, D.I.Crow, A.

(2020) Proc Natl Acad Sci U S A 117: 28355-28365

  • DOI: https://doi.org/10.1073/pnas.2017134117
  • Primary Citation of Related Structures:  
    6TPI

  • PubMed Abstract: 

    FtsEX is a bacterial ABC transporter that regulates the activity of periplasmic peptidoglycan amidases via its interaction with the murein hydrolase activator, EnvC. In Escherichia coli , FtsEX is required to separate daughter cells after cell division and for viability in low-osmolarity media. Both the ATPase activity of FtsEX and its periplasmic interaction with EnvC are required for amidase activation, but the process itself is poorly understood. Here we present the 2.1 Å structure of the FtsX periplasmic domain in complex with its periplasmic partner, EnvC. The EnvC-FtsX periplasmic domain complex has a 1-to-2 stoichiometry with two distinct FtsX-binding sites located within an antiparallel coiled coil domain of EnvC. Residues involved in amidase activation map to a previously identified groove in the EnvC LytM domain that is here found to be occluded by a "restraining arm" suggesting a self-inhibition mechanism. Mutational analysis, combined with bacterial two-hybrid screens and in vivo functional assays, verifies the FtsEX residues required for EnvC binding and experimentally test a proposed mechanism for amidase activation. We also define a predicted link between FtsEX and integrity of the outer membrane. Both the ATPase activity of FtsEX and its periplasmic interaction with EnvC are required for resistance to membrane-attacking antibiotics and detergents to which E. coli would usually be considered intrinsically resistant. These structural and functional data provide compelling mechanistic insight into FtsEX-mediated regulation of EnvC and its downstream control of periplasmic peptidoglycan amidases.


  • Organizational Affiliation

    School of Life Sciences, University of Warwick, Coventry, CV4 7AL, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Murein hydrolase activator EnvC386Escherichia coli K-12Mutation(s): 0 
Gene Names: envCyibPb3613JW5646
UniProt
Find proteins for P37690 (Escherichia coli (strain K12))
Explore P37690 
Go to UniProtKB:  P37690
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37690
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein FtsX
B, C
110Escherichia coli K-12Mutation(s): 0 
Gene Names: ftsXftsSb3462JW3427
UniProt
Find proteins for P0AC30 (Escherichia coli (strain K12))
Explore P0AC30 
Go to UniProtKB:  P0AC30
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AC30
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.031α = 90
b = 100.47β = 90
c = 107.78γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2020-11-04 
  • Deposition Author(s): Crow, A.

Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom214105/Z/18/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M01116X/1

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-04
    Type: Initial release
  • Version 1.1: 2020-11-18
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Refinement description