6TNA | pdb_00006tna

CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT

• PDB DOI: https://doi.org/10.2210/pdb6TNA/pdb
• Entry: 6TNA supersedes: 5TNA
• NAKB: 6TNA

• Classification: T-RNA
• Organism(s): Saccharomyces cerevisiae
• Mutation(s): No 


• Deposited: 1978-11-16 Released: 1979-01-16 
• Deposition Author(s): Sussman, J.L., Holbrook, S.R., Warrant, R.W., Church, G.M., Kim, S.-H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Observed: 
  0.198 (Depositor) 

Literature

Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement.

Sussman, J.L., Holbrook, S.R., Warrant, R.W., Church, G.M., Kim, S.H.

(1978) J Mol Biology 123: 607-630

• PubMed: 357742 
• DOI: https://doi.org/10.1016/0022-2836(78)90209-7
• Primary Citation Related Structures: 
  6TNA

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 24.99 kDa 
• Atom Count: 1,740 
• Modeled Residue Count: 76 
• Deposited Residue Count: 76 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
TRNAPHE	A	76	Saccharomyces cerevisiae

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	B [auth A], C [auth A], D [auth A], E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Observed: 0.198 (Depositor) 

Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33	α = 90
b = 56	β = 90
c = 161	γ = 90

Software Package:

Software Name	Purpose
CORELS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 1979-01-16 
Deposition Author(s): Sussman, J.L., Holbrook, S.R., Warrant, R.W., Church, G.M., Kim, S.-H.
• This entry supersedes: 5TNA

Revision History  

• Version 1.0: 1979-01-16
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 2.0: 2023-09-27
  Type: Remediation
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Other