6TAH

Crystal structure of a Nu-class Glutathione-S-Transferase from Pseudomonas aeruginosa PACS2 bound to glutathione


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.140 
  • R-Value Work: 0.120 
  • R-Value Observed: 0.121 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structure of nu-class glutathione transferase from Pseudomonas aeruginosa related to YfcG from E. coli

Ludewig, H.Blankenfeldt, W.Feiler, C.G.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseA [auth AAA]214Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase213Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseC [auth CAA]204Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseD [auth DAA]203Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GDS (Subject of Investigation/LOI)
Query on GDS

Download Ideal Coordinates CCD File 
E [auth AAA],
H [auth B],
K [auth CAA],
N [auth DAA]
OXIDIZED GLUTATHIONE DISULFIDE
C20 H32 N6 O12 S2
YPZRWBKMTBYPTK-BJDJZHNGSA-N
GOL
Query on GOL

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G [auth AAA]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
F [auth AAA],
I [auth B],
J [auth B],
L [auth CAA],
M [auth CAA]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A [auth AAA]L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.140 
  • R-Value Work: 0.120 
  • R-Value Observed: 0.121 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.5α = 90
b = 96.61β = 90
c = 100.81γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDEphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-16
    Type: Initial release