Biological Assembly 1  

 3D View: Structure

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 75-mer - AA1AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 75-mer - AA2AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 3000.04 kDa 
• Atom Count: 202869 
• Modelled Residue Count: 16541 
• Deposited Residue Count: 16559 
• Unique protein chains: 75
• Unique nucleic acid chains: 6

6T7T

Structure of yeast 80S ribosome stalled on poly(A) tract.

• DOI: 10.2210/pdb6T7T/pdb
• EMDataResource: EMD-10397

• Classification: TRANSLATION
• Organism(s): Saccharomyces cerevisiae S288C
• Mutation(s): No 


• Deposited: 2019-10-23 Released: 2019-12-25 
• Deposition Author(s): Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.

Tesina, P., Lessen, L.N., Buschauer, R., Cheng, J., Wu, C.C., Berninghausen, O., Buskirk, A.R., Becker, T., Beckmann, R., Green, R.

(2020) EMBO J 39: e103365-e103365

• PubMed: 31858614 
• DOI: 10.15252/embj.2019103365
• Primary Citation of Related Structures:  
  6T83, 6T7T, 6T7I, 6T4Q


• PubMed Abstract: 
  

Inhibitory codon pairs and poly(A) tracts within the translated mRNA cause ribosome stalling and reduce protein output. The molecular mechanisms that drive these stalling events, however, are still unknown. Here, we use a combination of in vitro biochemistry, ribosome profiling, and cryo-EM to define molecular mechanisms that lead to these ribosome stalls. First, we use an in vitro reconstituted yeast translation system to demonstrate that inhibitory codon pairs slow elongation rates which are partially rescued by increased tRNA concentration or by an artificial tRNA not dependent on wobble base-pairing. Ribosome profiling data extend these observations by revealing that paused ribosomes with empty A sites are enriched on these sequences. Cryo-EM structures of stalled ribosomes provide a structural explanation for the observed effects by showing decoding-incompatible conformations of mRNA in the A sites of all studied stall- and collision-inducing sequences. Interestingly, in the case of poly(A) tracts, the inhibitory conformation of the mRNA in the A site involves a nucleotide stacking array. Together, these data demonstrate a novel mRNA-induced mechanisms of translational stalling in eukaryotic ribosomes.

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Organizational Affiliation: 

Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L2-A	LA	251	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL2A, RPL5B, YFR031C-A, YFR031BC
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX45  Go to UniProtKB:  P0CX45

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S0-A	SA	206	Saccharomyces cerevisiae S288C	Mutation(s): 0
Find proteins for B3LI22 (Saccharomyces cerevisiae (strain RM11-1a)) Explore B3LI22  Go to UniProtKB:  B3LI22

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	LB	386	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL3, MAK8, TCM1, YOR063W, YOR29-14
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14126  Go to UniProtKB:  P14126

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1-A	SB	232	Saccharomyces cerevisiae S288C	Mutation(s): 0
Find proteins for B3RHV0 (Saccharomyces cerevisiae (strain RM11-1a)) Explore B3RHV0  Go to UniProtKB:  B3RHV0

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15	SP	117	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS15, RPS21, YOL040C
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01855  Go to UniProtKB:  Q01855

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	SC	216	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS2, RPS4, SUP38, SUP44, YGL123W, G2893
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25443  Go to UniProtKB:  P25443

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	SD	222	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS3, SUF14, YNL178W, N1653
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05750  Go to UniProtKB:  P05750

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4-A	SE	258	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS4A, RPS7B, YJR145C, J2186
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX35  Go to UniProtKB:  P0CX35

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Rps5p	SF	206	Saccharomyces cerevisiae S288C	Mutation(s): 0
Find proteins for A0A1L4AA68 (Saccharomyces cerevisiae) Explore A0A1L4AA68  Go to UniProtKB:  A0A1L4AA68

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6-A	SG	228	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS6A, RPS101, RPS10B, YPL090C, LPG18C
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX37  Go to UniProtKB:  P0CX37

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7-A	SH	184	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS7A, RPS30, YOR096W, YOR3177W
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26786  Go to UniProtKB:  P26786

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	SI	187	Saccharomyces cerevisiae S288C	Mutation(s): 0
Find proteins for A0A0J9X221 (Lachancea kluyveri) Explore A0A0J9X221  Go to UniProtKB:  A0A0J9X221

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9-A	SJ	184	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS9A, RPS13A, YS11A, YPL081W
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516  Go to UniProtKB:  O13516

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10-A	SK	92	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS10A, YOR293W
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08745  Go to UniProtKB:  Q08745

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11-A	SL	144	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS11A, RPS18A, YDR025W, YD9813.03
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX47  Go to UniProtKB:  P0CX47

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	SM	121	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS12, YOR369C
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48589  Go to UniProtKB:  P48589

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	SN	150	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS13, RPS13C, YDR064W, D4252, YD9609.18
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756  Go to UniProtKB:  P05756

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14-B	SO	127	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS14B, CRY2, YJL191W, J0354
Find proteins for P39516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39516  Go to UniProtKB:  P39516

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16-A	SQ	141	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS16A, RP61R, YMR143W, YM9375.12
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX51  Go to UniProtKB:  P0CX51

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17-B	SR	125	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS17B, RP51B, YDR447C
Find proteins for P14127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14127  Go to UniProtKB:  P14127

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18-A	SS	145	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS18A, YDR450W, D9461.35
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX55  Go to UniProtKB:  P0CX55

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19-A	ST	143	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS19A, RP55A, RPS16AA, YOL121C
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07280  Go to UniProtKB:  P07280

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	SU	100	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS20, URP2, YHL015W
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38701  Go to UniProtKB:  P38701

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21-A	SV	87	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS21A, RPS25, RPS25A, RPS26A, YKR057W
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0V8  Go to UniProtKB:  P0C0V8

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S22-A	SW	129	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS22A, RPS24, RPS24A, YJL190C, J0355
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1  Go to UniProtKB:  P0C0W1

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23-A	SX	144	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS23A, RPS28A, YGR118W, G6178
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX29  Go to UniProtKB:  P0CX29

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24-A	SY	134	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS24A, RPS24EA, YER074W
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX31  Go to UniProtKB:  P0CX31

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25-A	SZ	82	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS25A, RPS31A, YGR027C
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E792  Go to UniProtKB:  Q3E792

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26-B	Sa	97	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS26B, YER131W
Find proteins for P39939 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39939  Go to UniProtKB:  P39939

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27-A	Sb	81	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS27A, YKL156W
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35997  Go to UniProtKB:  P35997

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29-A	Sd	53	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS29A, RPS36A, YS29A, YLR388W, L8084.11
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41057  Go to UniProtKB:  P41057

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30-A	Se	60	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS30A, YLR287C-A, L8003.23, YLR287BC
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX33  Go to UniProtKB:  P0CX33

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S31	Sf	73	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS31, RPS37, UBI3, YLR167W, L9470.14
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05759  Go to UniProtKB:  P05759

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein subunit beta-like protein	Sg	312	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: ASC1, CPC2, YMR116C, YM9718.15C
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38011  Go to UniProtKB:  P38011

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28-A	Sc	63	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPS28A, RPS33, RPS33A, YOR167C, O3600
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9  Go to UniProtKB:  Q3E7X9

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4-A	LC	361	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL4A, RPL2, RPL2A, YBR031W, YBR0315
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10664  Go to UniProtKB:  P10664

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	LD	294	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL5, RPL1, RPL1A, YPL131W, LPI14W
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26321  Go to UniProtKB:  P26321

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6-B	LE	175	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL6B, RPL16B, RPL17B, YL16B, YLR448W, L9324.4
Find proteins for P05739 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05739  Go to UniProtKB:  P05739

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7-A	LF	222	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL7A, RPL6A, RPL8A, YL8A, YGL076C
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05737  Go to UniProtKB:  P05737

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8-A	LG	233	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL8A, MAK7, RPL4A, YHL033C
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P17076  Go to UniProtKB:  P17076

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9-A	LH	191	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL9A, RPL8A, RPL9, YGL147C
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05738  Go to UniProtKB:  P05738

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10	LI	218	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL10, GRC5, QSR1, YLR075W
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41805  Go to UniProtKB:  P41805

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11-B	LJ	169	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL11B, RP39B, RPL16B, YGR085C
Find proteins for Q3E757 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E757  Go to UniProtKB:  Q3E757

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13-A	LL	193	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL13A, YDL082W
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12690  Go to UniProtKB:  Q12690

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14-A	LM	136	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL14A, YKL006W, YKL153
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36105  Go to UniProtKB:  P36105

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15-A	LN	203	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL15A, RPL10A, RPL13A, YL10A, YLR029C
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05748  Go to UniProtKB:  P05748

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L16-A	LO	197	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL16A, RPL13, RPL21A, YIL133C
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26784  Go to UniProtKB:  P26784

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17-A	LP	183	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL17A, RPL17, RPL20A, YKL180W
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05740  Go to UniProtKB:  P05740

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18-A	LQ	185	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL18A, RP28A, YOL120C
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX49  Go to UniProtKB:  P0CX49

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19-A	LR	188	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL19A, RPL23A, YL14A, YBR084C-A, YBR084BC
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX82  Go to UniProtKB:  P0CX82

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20-A	LS	171	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL20A, RPL18A, RPL18A2, YMR242C, YM9408.04C
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX23  Go to UniProtKB:  P0CX23

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21-A	LT	159	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL21A, URP1, YBR191W, YBR1401
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02753  Go to UniProtKB:  Q02753

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22-A	LU	100	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL22A, YLR061W, L2168
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05749  Go to UniProtKB:  P05749

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23-A	LV	136	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL23A, RPL17A, RPL17AA, YBL087C, YBL0713
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX41  Go to UniProtKB:  P0CX41

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L24-A	LW	126	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL24A, RP29, RPL30A, YGL031C
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04449  Go to UniProtKB:  P04449

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L25	LX	121	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL25, YOL127W
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04456  Go to UniProtKB:  P04456

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26-A	LY	125	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL26A, RPL26, RPL33A, YLR344W, L8300.4
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05743  Go to UniProtKB:  P05743

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27-A	LZ	135	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL27A, RPL27, YHR010W
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H6  Go to UniProtKB:  P0C2H6

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	La	148	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL28, CYH2, YGL103W
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02406  Go to UniProtKB:  P02406

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	Lb	58	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL29, YL43, YFR032C-A, YFR032BW
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05747  Go to UniProtKB:  P05747

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	Lc	96	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL30, RPL32, YGL030W
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14120  Go to UniProtKB:  P14120

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31-A	Ld	109	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL31A, RPL34, RPL34A, YDL075W, D2478
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H8  Go to UniProtKB:  P0C2H8

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	Le	127	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL32, YBL092W, YBL0838
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38061  Go to UniProtKB:  P38061

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L33-A	Lf	106	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL33A, RPL37A, YPL143W, LPI4W, P2625
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05744  Go to UniProtKB:  P05744

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34-A	Lg	112	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL34A, YER056C-A, YER056BC
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P87262  Go to UniProtKB:  P87262

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35-A	Lh	119	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL35A, SOS1, YDL191W, D1249
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX84  Go to UniProtKB:  P0CX84

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36-A	Li	99	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL36A, RPL39A, YMR194W, YM9646.06
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05745  Go to UniProtKB:  P05745

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37-A	Lj	85	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL37A, RPL35A, YLR185W, L9470.6
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49166  Go to UniProtKB:  P49166

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	Lk	77	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL38, YLR325C, L8543.2
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49167  Go to UniProtKB:  P49167

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	Ll	50	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL39, RPL46, SPB2, YJL189W, J0360
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04650  Go to UniProtKB:  P04650

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	Lm	52	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL40A, UBI1, YIL148W
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CH08  Go to UniProtKB:  P0CH08

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41-A	Ln	25	Saccharomyces cerevisiae S288C	Mutation(s): 0

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L42-A	Lo	103	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL42A, RPL41A, SCL41A, YNL162W, N1722
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX27  Go to UniProtKB:  P0CX27

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L43-A	Lp	91	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: RPL43A, YPR043W, YP9499.02
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX25  Go to UniProtKB:  P0CX25

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
nascent chain	A	4	Saccharomyces cerevisiae S288C	Mutation(s): 0

Entity ID: 5
Molecule	Chains	Length	Organism	Image
18S rRNA	C2	1771	Saccharomyces cerevisiae S288C

Entity ID: 37
Molecule	Chains	Length	Organism	Image
5S rRNA	C4	121	Saccharomyces cerevisiae S288C

Entity ID: 38
Molecule	Chains	Length	Organism	Image
5.8S rRNA	C3	158	Saccharomyces cerevisiae S288C

Entity ID: 78
Molecule	Chains	Length	Organism	Image
25S rRNA	C1	3184	Saccharomyces cerevisiae S288C

Entity ID: 79
Molecule	Chains	Length	Organism	Image
mRNA	5	11	Saccharomyces cerevisiae S288C

Entity ID: 80
Molecule	Chains	Length	Organism	Image
tRNA	6, 7	76	Saccharomyces cerevisiae S288C

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2019-10-23 
• Released Date: 2019-12-25 
Deposition Author(s): Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	BE1814/15-1

Revision History  

• Version 1.0: 2019-12-25
  Type: Initial release
  
• Version 1.1: 2020-01-01
  Changes: Database references
• Version 2.0: 2020-02-19
  Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary