Download MendeleyTHERMOLYSIN IN COMPLEX WITH FRAGMENT J88
Magari, F., Heine, A., Klebe, G.To be published.
6SCU
THERMOLYSIN IN COMPLEX WITH FRAGMENT J88
- PDB DOI: https://doi.org/10.2210/pdb6SCU/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus thermoproteolyticus
- Mutation(s): No
- Deposited: 2019-07-25 Released: 2020-08-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.162
- R-Value Work: 0.132
- R-Value Observed: 0.133
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thermolysin | A [auth E] | 316 | Bacillus thermoproteolyticus | Mutation(s): 0 EC: 3.4.24.27 |  |
UniProt | |||||
Find proteins for P00800 (Bacillus thermoproteolyticus) Explore P00800 Go to UniProtKB: P00800 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00800 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 88B (Subject of Investigation/LOI) Query on 88B | H [auth E] | 4-diazanyl-4-oxidanylidene-butanoic acid C4 H8 N2 O3 XRMBRQWBOICYRP-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | G [auth E] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | B [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth E], D [auth E], E, F [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.162
- R-Value Work: 0.132
- R-Value Observed: 0.133
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.307 | α = 90 |
| b = 92.307 | β = 90 |
| c = 129.622 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MxCuBE | data collection |
| XDS | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-08-26 Deposition Author(s): Magari, F., Heine, A., Klebe, G.
Revision History (Full details and data files)
- Version 1.0: 2020-08-26
Type: Initial release
