6SBA | pdb_00006sba

Crystal Structure of mTEAD with a VGL4 Tertiary Structure Mimetic


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 
    0.175 (Depositor), 0.182 (DCC) 
  • R-Value Work: 
    0.151 (Depositor), 0.156 (DCC) 
  • R-Value Observed: 
    0.152 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6SBA

This is version 1.2 of the entry. See complete history

Literature

A protein tertiary structure mimetic modulator of the Hippo signalling pathway.

Adihou, H.Gopalakrishnan, R.Forster, T.Gueret, S.M.Gasper, R.Geschwindner, S.Carrillo Garcia, C.Karatas, H.Pobbati, A.V.Vazquez-Chantada, M.Davey, P.Wassvik, C.M.Pang, J.K.S.Soh, B.S.Hong, W.Chiarparin, E.Schade, D.Plowright, A.T.Valeur, E.Lemurell, M.Grossmann, T.N.Waldmann, H.

(2020) Nat Commun 11: 5425-5425

  • DOI: https://doi.org/10.1038/s41467-020-19224-8
  • Primary Citation Related Structures: 
    6SBA

  • PubMed Abstract: 

    Transcription factors are key protein effectors in the regulation of gene transcription, and in many cases their activity is regulated via a complex network of protein-protein interactions (PPI). The chemical modulation of transcription factor activity is a long-standing goal in drug discovery but hampered by the difficulties associated with the targeting of PPIs, in particular when extended and flat protein interfaces are involved. Peptidomimetics have been applied to inhibit PPIs, however with variable success, as for certain interfaces the mimicry of a single secondary structure element is insufficient to obtain high binding affinities. Here, we describe the design and characterization of a stabilized protein tertiary structure that acts as an inhibitor of the interaction between the transcription factor TEAD and its co-repressor VGL4, both playing a central role in the Hippo signalling pathway. Modification of the inhibitor with a cell-penetrating entity yielded a cell-permeable proteomimetic that activates cell proliferation via regulation of the Hippo pathway, highlighting the potential of protein tertiary structure mimetics as an emerging class of PPI modulators.


  • Organizational Affiliation
    • Medicinal Chemistry, Research and Early Development Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Macromolecule Content 

  • Total Structure Weight: 28.71 kDa 
  • Atom Count: 2,207 
  • Modeled Residue Count: 232 
  • Deposited Residue Count: 241 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-3221Mus musculusMutation(s): 0 
Gene Names: Tead4Tcf13r1Tef3Tefr1
UniProt
Find proteins for Q62296 (Mus musculus)
Explore Q62296 
Go to UniProtKB:  Q62296
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ62296
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Vestigial like 4 (Drosophila), isoform CRA_a20Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q80V24 (Mus musculus)
Explore Q80V24 
Go to UniProtKB:  Q80V24
IMPC:  MGI:2652840
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ80V24
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free:  0.175 (Depositor), 0.182 (DCC) 
  • R-Value Work:  0.151 (Depositor), 0.156 (DCC) 
  • R-Value Observed: 0.152 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.5α = 90
b = 65.11β = 90
c = 74.91γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilGermany678623

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-30
    Type: Initial release
  • Version 1.1: 2021-04-28
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Refinement description