6SAT | pdb_00006sat

Cell Division Protein SepF in complex with C-terminal domain of FtsZ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 
    0.231 (Depositor), 0.240 (DCC) 
  • R-Value Work: 
    0.209 (Depositor) 
  • R-Value Observed: 
    0.210 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 6SAT

This is version 1.2 of the entry. See complete history

Literature

Essential dynamic interdependence of FtsZ and SepF for Z-ring and septum formation in Corynebacterium glutamicum.

Sogues, A.Martinez, M.Gaday, Q.Ben Assaya, M.Grana, M.Voegele, A.VanNieuwenhze, M.England, P.Haouz, A.Chenal, A.Trepout, S.Duran, R.Wehenkel, A.M.Alzari, P.M.

(2020) Nat Commun 11: 1641-1641

  • DOI: https://doi.org/10.1038/s41467-020-15490-8
  • Primary Citation Related Structures: 
    6SAT, 6SCP, 6SCQ, 6SCS

  • PubMed Abstract: 

    The mechanisms of Z-ring assembly and regulation in bacteria are poorly understood, particularly in non-model organisms. Actinobacteria, a large bacterial phylum that includes the pathogen Mycobacterium tuberculosis, lack the canonical FtsZ-membrane anchors and Z-ring regulators described for E. coli. Here we investigate the physiological function of Corynebacterium glutamicum SepF, the only cell division-associated protein from Actinobacteria known to interact with the conserved C-terminal tail of FtsZ. We show an essential interdependence of FtsZ and SepF for formation of a functional Z-ring in C. glutamicum. The crystal structure of the SepF-FtsZ complex reveals a hydrophobic FtsZ-binding pocket, which defines the SepF homodimer as the functional unit, and suggests a reversible oligomerization interface. FtsZ filaments and lipid membranes have opposing effects on SepF polymerization, indicating that SepF has multiple roles at the cell division site, involving FtsZ bundling, Z-ring tethering and membrane reshaping activities that are needed for proper Z-ring assembly and function.


  • Organizational Affiliation
    • Unité de Microbiologie Structurale, Institut Pasteur, CNRS UMR 3528, Université de Paris, 75015, Paris, France.

Macromolecule Content 

  • Total Structure Weight: 22.19 kDa 
  • Atom Count: 1,585 
  • Modeled Residue Count: 189 
  • Deposited Residue Count: 200 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cell division protein SepF
A, B
90Corynebacterium glutamicum ATCC 13032Mutation(s): 0 
Gene Names: sepFCgl2152
UniProt
Find proteins for Q8NNN6 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534))
Explore Q8NNN6 
Go to UniProtKB:  Q8NNN6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NNN6
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Cell division protein FtsZC [auth P],
D [auth Q]
10Corynebacterium glutamicum ATCC 13032Mutation(s): 0 
UniProt
Find proteins for P94337 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534))
Explore P94337 
Go to UniProtKB:  P94337
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP94337
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free:  0.231 (Depositor), 0.240 (DCC) 
  • R-Value Work:  0.209 (Depositor) 
  • R-Value Observed: 0.210 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 35.67α = 90
b = 46.08β = 90
c = 98.98γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
BUSTERrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-18-CE11-0017-01

Revision History  (Full details and data files)

  • Version 1.0: 2020-03-11
    Type: Initial release
  • Version 1.1: 2020-09-23
    Changes: Database references
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references