6RKA

Inter-dimeric interface controls function and stability of S-methionine adenosyltransferase from U. urealiticum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.233 

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This is version 1.2 of the entry. See complete history


Literature

The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase.

Kleiner, D.Shmulevich, F.Zarivach, R.Shahar, A.Sharon, M.Ben-Nissan, G.Bershtein, S.

(2019) J Mol Biol 431: 4796-4816

  • DOI: https://doi.org/10.1016/j.jmb.2019.09.003
  • Primary Citation of Related Structures:  
    6RJS, 6RK5, 6RK7, 6RKA, 6RKC

  • PubMed Abstract: 

    Methionine S-adenosyltransferases (MATs) are predominantly homotetramers, comprised of dimers of dimers. The larger, highly conserved intradimeric interface harbors two active sites, making the dimer the obligatory functional unit. However, functionality of the smaller, more diverged, and recently evolved interdimeric interface is largely unknown. Here, we show that the interdimeric interface of Ureaplasmaurealiticum MAT has evolved to control the catalytic activity and structural integrity of the homotetramer in response to product accumulation. When all four active sites are occupied with the product, S-adenosylmethionine (SAM), binding of four additional SAM molecules to the interdimeric interface prompts a ∼45° shift in the dimer orientation and a concomitant ∼60% increase in the interface area. This rearrangement inhibits the enzymatic activity by locking the flexible active site loops in a closed state and renders the tetramer resistant to proteolytic degradation. Our findings suggest that the interdimeric interface of MATs is subject to rapid evolutionary changes that tailor the molecular properties of the entire homotetramer to the specific needs of the organism.


  • Organizational Affiliation

    Department of Life Sciences, Ben-Gurion University of the Negev, POB 653, Beer-Sheva, 84105, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Methionine adenosyltransferase
A, B, C, D
382Ureaplasma urealyticum serovar 7 str. ATCC 27819Mutation(s): 0 
Gene Names: metKUUR7_0462
EC: 2.5.1.6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.233 
  • Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 114.468α = 90
b = 114.468β = 90
c = 228.115γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael1630/15

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-25
    Type: Initial release
  • Version 1.1: 2019-12-25
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Refinement description