6RJI

X-ray structure of the elongation factor P of S. aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

NMR and crystallographic structural studies of the Elongation factor P from Staphylococcus aureus.

Golubev, A.Fatkhullin, B.Gabdulkhakov, A.Bikmullin, A.Nurullina, L.Garaeva, N.Islamov, D.Klochkova, E.Klochkov, V.Aganov, A.Khusainov, I.Validov, S.Yusupova, G.Yusupov, M.Usachev, K.

(2020) Eur Biophys J 49: 223-230

  • DOI: 10.1007/s00249-020-01428-x
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Elongation factor P (EF-P) is a translation protein factor that plays an important role in specialized translation of consecutive proline amino acid motifs. EF-P is an essential protein for cell fitness in native environmental conditions. It regulate ...

    Elongation factor P (EF-P) is a translation protein factor that plays an important role in specialized translation of consecutive proline amino acid motifs. EF-P is an essential protein for cell fitness in native environmental conditions. It regulates synthesis of proteins involved in bacterial motility, environmental adaptation and bacterial virulence, thus making EF-P a potential drug target. In the present study, we determined the solution and crystal structure of EF-P from the pathogenic bacteria Staphylococcus aureus at 1.48 Å resolution. The structure can serve as a platform for structure-based drug design of novel antibiotics to combat the growing antibiotic resistance of S. aureus.


    Organizational Affiliation

    NMR Laboratory, Medical Physics Department, Institute of Physics, Kazan Federal University, 18 Kremlyovskaya, Kazan, 420008, Russian Federation. k.usachev@kpfu.ru.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Elongation factor PA191Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
Gene Names: efpSAOUHSC_01625
Find proteins for Q2FY41 (Staphylococcus aureus (strain NCTC 8325))
Explore Q2FY41 
Go to UniProtKB:  Q2FY41
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.266α = 90
b = 43.46β = 90
c = 126.343γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation17-74-20009

Revision History 

  • Version 1.0: 2020-04-01
    Type: Initial release
  • Version 1.1: 2020-06-03
    Changes: Database references