6QTT

Crystal structure of an Arabidopsis WD40 domain in complex with a transcription factor homolog


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of an Arabidopsis WD40 domain in complex with a transcription factor homolog

Hothorn, M.Lau, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase COP1
A
330Arabidopsis thalianaMutation(s): 0 
Gene Names: COP1
EC: 2.3.2.27
Find proteins for P43254 (Arabidopsis thaliana)
Go to UniProtKB:  P43254
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transcription factor HY5-like
B
10Arabidopsis thalianaMutation(s): 0 
Gene Names: HYH (BZIP64)
Find proteins for Q8W191 (Arabidopsis thaliana)
Go to UniProtKB:  Q8W191
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MLI
Query on MLI

Download SDF File 
Download CCD File 
A
MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
ACE
Query on ACE
B
NON-POLYMERC2 H4 O

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.154 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.570α = 90.00
b = 55.163β = 90.00
c = 102.822γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-02-25 
  • Released Date: 2019-07-10 
  • Deposition Author(s): Hothorn, M., Lau, K.

Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_175774
European Communitys Seventh Framework ProgrammeSwitzerland310539
European Molecular Biology OrganizationSwitzerlandALTF 493-2015

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release