6QDT

Crystal structure of 14-3-3sigma in complex with a RapGef2 pT740 phosphopeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A single-agent polypharmacological approach to stimulate axon regeneration

Kaplan, A.Andrei, S.A.Ottmann, C.Fournier, A.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
14-3-3 protein sigma A236Homo sapiensMutation(s): 0 
Gene Names: SFNHME1
Find proteins for P31947 (Homo sapiens)
Explore P31947 
Go to UniProtKB:  P31947
NIH Common Fund Data Resources
PHAROS:  P31947
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Rap guanine nucleotide exchange factor 2 B12Homo sapiensMutation(s): 1 
Gene Names: RAPGEF2KIAA0313NRAPGEPPDZGEF1
Find proteins for Q9Y4G8 (Homo sapiens)
Explore Q9Y4G8 
Go to UniProtKB:  Q9Y4G8
NIH Common Fund Data Resources
PHAROS:  Q9Y4G8
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
TPO
Query on TPO
BL-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.657α = 90
b = 112.411β = 90
c = 62.749γ = 90
Software Package:
Software NamePurpose
xia2data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
xia2data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Netherlands Organisation for Scientific ResearchNetherlandsECHO -STIP 717.014.001

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-29
    Type: Initial release