6Q4N

Fusidic acid bound AcrB_V340A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Fusidic acid bound AcrB_V340A

Tam, H.K.Pos, K.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Multidrug efflux pump subunit AcrB
A, B, C
1057Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: acrB (acrE)
Find proteins for P31224 (Escherichia coli (strain K12))
Go to UniProtKB:  P31224
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DARPin
D, E
169N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 12 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OCT
Query on OCT

Download SDF File 
Download CCD File 
B, C
N-OCTANE
C8 H18
TVMXDCGIABBOFY-UHFFFAOYSA-N
 Ligand Interaction
DDR
Query on DDR

Download SDF File 
Download CCD File 
B
(2S)-3-hydroxypropane-1,2-diyl didecanoate
1,2-DIDECANOYL-SN-GLYCEROL
C23 H44 O5
GNSDEDOVXZDMKM-NRFANRHFSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
D12
Query on D12

Download SDF File 
Download CCD File 
B
DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, E
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
FUA
Query on FUA

Download SDF File 
Download CCD File 
A, B, C
FUSIDIC ACID
C31 H48 O6
IECPWNUMDGFDKC-MZJAQBGESA-N
 Ligand Interaction
DDQ
Query on DDQ

Download SDF File 
Download CCD File 
B, C
DECYLAMINE-N,N-DIMETHYL-N-OXIDE
C12 H27 N O
ZRKZFNZPJKEWPC-UHFFFAOYSA-N
 Ligand Interaction
P6G
Query on P6G

Download SDF File 
Download CCD File 
A
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
 Ligand Interaction
PTY
Query on PTY

Download SDF File 
Download CCD File 
B, C
PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
 Ligand Interaction
LMT
Query on LMT

Download SDF File 
Download CCD File 
A, B, C
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
 Ligand Interaction
D10
Query on D10

Download SDF File 
Download CCD File 
B, C
DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
 Ligand Interaction
HEX
Query on HEX

Download SDF File 
Download CCD File 
B, C
HEXANE
C6 H14
VLKZOEOYAKHREP-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.233 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 145.208α = 90.00
b = 162.986β = 90.00
c = 245.638γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACphasing
REFMACrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-12-06 
  • Released Date: 2019-11-13 
  • Deposition Author(s): Tam, H.K., Pos, K.M.

Funding OrganizationLocationGrant Number
German Research FoundationGermanySFB807 (Transport and Communication across Biological Membranes
German Research FoundationGermanyDFG EXC115 (Cluster of Excellence Frankfurt Macromolecular Complexes)

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release