A GH31 family sulfoquinovosidase from E. rectale in complex with aza-sugar inhibitor IFGSQ
Lingford, J.P., Jarva, M.A., John, A., Goddard-Borger, E.D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Alpha-glucosidase | A, B [auth C] | 676 | Agathobacter rectalis | Mutation(s): 0  Gene Names: DW001_07735, DW028_04245, DW967_02630 EC: 3.2.1.20 | |
UniProt | |||||
Find proteins for C4ZGB7 (Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)) Explore C4ZGB7  Go to UniProtKB:  C4ZGB7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C4ZGB7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
9VH (Subject of Investigation/LOI) Query on 9VH | C [auth A], H [auth C] | [(3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)piperidin-3-yl]methanesulfonic acid C6 H13 N O5 S RCSXCFCCYYFFCY-HSUXUTPPSA-N | |||
SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] I [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 102.62 | α = 90 |
b = 122.667 | β = 90 |
c = 126.733 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
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Funding Organization | Location | Grant Number |
---|---|---|
National Health and Medical Research Council (NHMRC, Australia) | Australia | GNT1139549 |