6P50
Crystal Structure of a Complex of human IL-7Ralpha with an anti-IL-7Ralpha Fab 4A10
- PDB DOI: https://doi.org/10.2210/pdb6P50/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2019-05-29 Released: 2019-09-04 
- Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.330 
- R-Value Work: 0.285 
- R-Value Observed: 0.288 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-7 receptor subunit alpha | A [auth C] | 223 | Homo sapiens | Mutation(s): 0  Gene Names: IL7R | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P16871 (Homo sapiens) Explore P16871  Go to UniProtKB:  P16871 | |||||
PHAROS:  P16871 GTEx:  ENSG00000168685  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16871 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
anti-IL-7R 4A10 Fab heavy chain | B [auth H] | 225 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
anti-IL-7R 4A10 Fab light chain | C [auth L] | 213 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.330 
- R-Value Work: 0.285 
- R-Value Observed: 0.288 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 145.113 | α = 90 |
b = 40.171 | β = 105.477 |
c = 105.097 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASES | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-09-04  Deposition Author(s): Walsh, S.T.R., Kashi, L., Kohnhorst, C.L.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-09-04
Type: Initial release - Version 1.1: 2019-12-04
Changes: Author supporting evidence - Version 1.2: 2020-01-01
Changes: Database references - Version 1.3: 2020-02-05
Changes: Data collection - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.5: 2023-10-11
Changes: Data collection, Database references, Refinement description, Structure summary