6P06

Ternary structure of the E52D mutant of ANT-4 with Neomycin and AMPCPP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

"Catch and Release": a Variation of the Archetypal Nucleotidyl Transfer Reaction

Selvaraj, B.Kocaman, S.Trifas, M.Serpersu, E.H.Cuneo, M.J.

(2020) ACS Catal 10: 3548-3555


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Kanamycin nucleotidyltransferaseA, B256Bacillus sp. (in: Bacteria)Mutation(s): 1 
Gene Names: kntkan
EC: 2.7.7
UniProt
Find proteins for P05058 (Bacillus sp)
Explore P05058 
Go to UniProtKB:  P05058
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05058
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.71α = 90
b = 97.95β = 90
c = 100.7γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States--
Department of Energy (DOE, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-29
    Type: Initial release
  • Version 1.1: 2020-05-06
    Changes: Database references
  • Version 1.2: 2020-05-20
    Changes: Database references