6ORC | pdb_00006orc

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

PDB DOI: https://doi.org/10.2210/pdb6ORC/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Oxalobacter formigenes OXCC13
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-04-29 Released: 2020-05-06
Deposition Author(s): Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.98 Å
R-Value Free:
0.248 (Depositor), 0.248 (DCC)
R-Value Work:
0.208 (Depositor), 0.213 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecule Content

Total Structure Weight: 30.78 kDa
Atom Count: 2,098
Modeled Residue Count: 267
Deposited Residue Count: 270
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sel1 repeat protein	A, B	135	Oxalobacter formigenes OXCC13	Mutation(s): 0 Gene Names: OFBG_00634
UniProt
Find proteins for C3X8T0 (Oxalobacter formigenes OXCC13) Explore C3X8T0 Go to UniProtKB: C3X8T0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C3X8T0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE Query on MSE	A, B	MET	Selenomethionine	C₅ H₁₁ N O₂ Se

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.98 Å
R-Value Free: 0.248 (Depositor), 0.248 (DCC)
R-Value Work: 0.208 (Depositor), 0.213 (DCC)
R-Value Observed: 0.210 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.301	α = 90
b = 75.479	β = 90
c = 78.344	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-05-06

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2020-05-06
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Structure summary