6O6B | pdb_00006o6b

Rotavirus A-VP3 (RVA-VP3)

• PDB DOI: https://doi.org/10.2210/pdb6O6B/pdb
• EM Map EMD-0632: EMDB EMDataResource

• Classification: STRUCTURAL PROTEIN
• Organism(s): Rotavirus A
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2019-03-05 Released: 2020-03-11 
• Deposition Author(s): Kumar, D., Yu, X., Prasad, V., Wang, Z.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), Welch Foundation, Robert A. Welch Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

A sub-atomic resolution cryo-EM of full-length Rotavirus A-VP3 (RVA-VP3)

Kumar, D., Yu, X., Prasad, V., Wang, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration, equilibrium centrifugation

Macromolecule Content 

• Total Structure Weight: 392.27 kDa 
• Atom Count: 27,532 
• Modeled Residue Count: 3,312 
• Deposited Residue Count: 3,340 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein VP3	A, B, C, D	835	Rotavirus A	Mutation(s): 0  Gene Names: VP3 EC: 3.1.4 (PDB Primary Data), 2.7.7.50 (PDB Primary Data), 2.1.1.56 (PDB Primary Data)
UniProt
Find proteins for Q1WK45 (Rotavirus A) Explore Q1WK45  Go to UniProtKB:  Q1WK45

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
5GP	E [auth A], F [auth B], G [auth C], H [auth D]	GUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O8 P RQFCJASXJCIDSX-UUOKFMHZSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	2.1.0

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-03-11 
Deposition Author(s): Kumar, D., Yu, X., Prasad, V., Wang, Z.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI36040
Welch Foundation	United States	Q-1967-20180324
Robert A. Welch Foundation	United States	Q1279

Revision History  

• Version 1.0: 2020-03-11
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references