Download MendeleyCrystal Structure of Selenocysteine Lyase from Escherichia coli
Scortecci, J.F., Brandao-Neto, J., Pereira, H.M., Thiemann, O.H.To be published.
6NDN
Crystal Structure of Selenocysteine Lyase from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb6NDN/pdb
- Classification: LYASE
- Organism(s): Escherichia coli UMEA 3718-1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-12-14 Released: 2019-12-25
- Funding Organization(s): Sao Paulo Research Foundation (FAPESP)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.173
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
Currently 6NDN does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cysteine desulfurase | 406 | Escherichia coli UMEA 3718-1 | Mutation(s): 0 Gene Names: sufS, G994_01747 EC: 2.8.1.7 (PDB Primary Data), 4.4.1.16 (PDB Primary Data) |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP (Subject of Investigation/LOI) Query on PLP | B [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.173
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 126.52 | α = 90 |
| b = 126.52 | β = 90 |
| c = 134.091 | γ = 90 |
| Software Name | Purpose |
|---|---|
| xia2 | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
Structure Validation
Currently 6NDN does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-12-25 Deposition Author(s): Scortecci, J.F., Brandao-Neto, J., Pereira, H.M., Thiemann, O.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Sao Paulo Research Foundation (FAPESP) | Brazil | 2016/20977-7 |
Revision History (Full details and data files)
- Version 1.0: 2019-12-25
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
