6NAQ

Crystal structure of Neisseria meningitidis ClpP protease in Apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores.

Mabanglo, M.F.Leung, E.Vahidi, S.Seraphim, T.V.Eger, B.T.Bryson, S.Bhandari, V.Zhou, J.L.Mao, Y.Q.Rizzolo, K.Barghash, M.M.Goodreid, J.D.Phanse, S.Babu, M.Barbosa, L.R.S.Ramos, C.H.I.Batey, R.A.Kay, L.E.Pai, E.F.Houry, W.A.

(2019) Commun Biol 2: 410-410


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP-dependent Clp protease proteolytic subunit
A, B, C, D, E, F, G, H, I, J, K, L, M, N
218Neisseria meningitidisMutation(s): 0 
Gene Names: clpP
EC: 3.4.21.92
Find proteins for Q9JZ38 (Neisseria meningitidis serogroup B (strain MC58))
Go to UniProtKB:  Q9JZ38
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, M, N
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.584α = 90
b = 127.945β = 90.19
c = 120.195γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaXNE-86945
Canadian Institutes of Health Research (CIHR)CanadaPJT-148564

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence
  • Version 1.2: 2020-01-29
    Changes: Database references