Download MendeleyCrystal Structure of Adenosine Deaminase from Vibrio cholerae Complexed with Pentostatin (Deoxycoformycin) (CASP target)
Maltseva, N., Kim, Y., Endres, M., Welk, L., Joachimiak, A.To be published.
6N91
Crystal Structure of Adenosine Deaminase from Vibrio cholerae Complexed with Pentostatin (Deoxycoformycin)
- DOI: 10.2210/pdb6N91/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-11-30 Released: 2018-12-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.174
- R-Value Work: 0.154
- R-Value Observed: 0.155
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenosine deaminase | A, B | 340 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: add, VC_2751 EC: 3.5.4.4 |  |
Find proteins for Q9KNI7 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KNI7 Go to UniProtKB: Q9KNI7 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 9 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DCF Query on DCF | A, B | 2'-DEOXYCOFORMYCIN C11 H16 N4 O4 FPVKHBSQESCIEP-JQCXWYLXSA-N |  | Ligand Interaction | |
| CXS Query on CXS | A, B | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID C9 H19 N O3 S PJWWRFATQTVXHA-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| PO4 Query on PO4 | A, B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | A, B | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| FMT Query on FMT | A, B | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | B | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.174
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 134.906 | α = 90 |
| b = 134.906 | β = 90 |
| c = 136.144 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Deposited Date: 2018-11-30
- Released Date: 2018-12-19 Deposition Author(s): Maltseva, N., Kim, Y., Endres, M., Welk, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
