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Download EndnoteCrystal Structure of Adenosine Deaminase from Vibrio cholerae Complexed with Pentostatin (Deoxycoformycin) (CASP target)
Maltseva, N., Kim, Y., Endres, M., Welk, L., Joachimiak, A.To be published.
6N91
Crystal Structure of Adenosine Deaminase from Vibrio cholerae Complexed with Pentostatin (Deoxycoformycin)
- DOI: 10.2210/pdb6N91/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
- Expression System: Escherichia coli
- Deposited: 2018-11-30 Released: 2018-12-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.174
- R-Value Work: 0.154
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Adenosine deaminase | A, B | 340 | Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) | Mutation(s): 0 Gene Names: add EC: 3.5.4.4 |
Find proteins for Q9KNI7 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Go to UniProtKB: Q9KNI7 | ||||
Small Molecules
| Ligands 9 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A, B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| ZN Query on ZN | A, B | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | B | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| FMT Query on FMT | A, B | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| CXS Query on CXS | A, B | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID C9 H19 N O3 S PJWWRFATQTVXHA-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| DCF Query on DCF | A, B | 2'-DEOXYCOFORMYCIN C11 H16 N4 O4 FPVKHBSQESCIEP-JQCXWYLXSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.174
- R-Value Work: 0.154
- Space Group: P 32 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 134.906 | α = 90.00 |
| b = 134.906 | β = 90.00 |
| c = 136.144 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2018-11-30
- Released Date: 2018-12-19
- Deposition Author(s): Maltseva, N., Kim, Y., Endres, M., Welk, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History
- Version 1.0: 2018-12-19
Type: Initial release
