6N39

Crystal structure of an dephospho-CoA kinase CoaE from Mycobacterium paratuberculosis

• PDB DOI: https://doi.org/10.2210/pdb6N39/pdb

• Classification: TRANSFERASE
• Organism(s): Mycobacterium avium subsp. paratuberculosis K-10
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-11-14 Released: 2018-11-21 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.193 
• R-Value Work: 0.170 
• R-Value Observed: 0.171 

Literature

Crystal structure of an dephospho-CoA kinase CoaE from Mycobacterium paratuberculosis

Mayclin, S.J., Irwin, R.M., Abendroth, J., Horanyi, P.S., Lorimer, D.D., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 45.59 kDa 
• Atom Count: 3,381 
• Modelled Residue Count: 404 
• Deposited Residue Count: 415 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dephospho-CoA kinase	A	415	Mycobacterium avium subsp. paratuberculosis K-10	Mutation(s): 0  Gene Names: coaE, MAP_1326 EC: 2.7.1.24
UniProt
Find proteins for Q740M4 (Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)) Explore Q740M4  Go to UniProtKB:  Q740M4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ACT	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.193 
• R-Value Work: 0.170 
• R-Value Observed: 0.171 
• Space Group: P 4₁ 2₁ 2
• Diffraction Data: https://doi.org/10.18430/m36n39

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.17	α = 90
b = 85.17	β = 90
c = 198.78	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
PHASER	phasing
BUCCANEER	phasing
ARP/wARP	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-11-21 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2018-11-21
  Type: Initial release
  
• Version 1.1: 2024-03-13
  Changes: Data collection, Database references