6MR1

RbcS-like subdomain of CcmM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The small RbcS-like domains of the beta-carboxysome structural protein, CcmM, bind RubisCO at a site distinct from that binding the RbcS subunit.

Ryan, P.Forrester, T.J.B.Wroblewski, C.Kenney, T.M.G.Kitova, E.N.Klassen, J.S.Kimber, M.S.

(2018) J. Biol. Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Carbon dioxide concentrating mechanism protein
A, B
96Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ccmM
Find proteins for Q8DKB5 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DKB5
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SCN
Query on SCN

Download SDF File 
Download CCD File 
B
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CO
Query on CO

Download SDF File 
Download CCD File 
A, B
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.171 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 28.900α = 90.00
b = 73.560β = 90.00
c = 76.570γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-10-11 
  • Released Date: 2019-01-02 
  • Deposition Author(s): Ryan, P., Kimber, M.S.

Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (Canada)Canada04045-2015

Revision History 

  • Version 1.0: 2019-01-02
    Type: Initial release
  • Version 1.1: 2019-01-09
    Type: Data collection, Database references