6MEM

A unique supramolecular organization of photosystem I in the moss Physcomitrella patens

  • Classification: PHOTOSYNTHESIS
  • Organism(s): Physcomitrium patens
  • Mutation(s): No 

  • Deposited: 2018-09-06 Released: 2018-11-21 
  • Deposition Author(s): Iwai, M., Grob, P.
  • Funding Organization(s): Department of Energy (DOE, United States), National Institutes of Health/National Institute of Biomedical Imaging and Bioengineering (NIH/NIBIB)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A unique supramolecular organization of photosystem I in the moss Physcomitrella patens.

Iwai, M.Grob, P.Iavarone, A.T.Nogales, E.Niyogi, K.K.

(2018) Nat Plants 4: 904-909

  • DOI: https://doi.org/10.1038/s41477-018-0271-1
  • Primary Citation of Related Structures:  
    6MEM

  • PubMed Abstract: 

    The photosynthesis machinery in chloroplast thylakoid membranes is comprised of multiple protein complexes and supercomplexes 1,2 . Here, we show a novel supramolecular organization of photosystem I (PSI) in the moss Physcomitrella patens by single-particle cryo-electron microscopy. The moss-specific light-harvesting complex (LHC) protein Lhcb9 is involved in this PSI supercomplex, which has been shown to have a molecular density similar to that of the green alga Chlamydomonas reinhardtii 3 . Our results show that the structural organization is unexpectedly different-two rows of the LHCI belt exist as in C. reinhardtii 4 , but the outer one is shifted toward the PsaK side. Furthermore, one trimeric LHC protein and one monomeric LHC protein position alongside PsaL/K, filling the gap between these subunits and the outer LHCI belt. We provide evidence showing that Lhcb9 is a key factor, acting as a linkage between the PSI core and the outer LHCI belt to form the unique supramolecular organization of the PSI supercomplex in P. patens.


  • Organizational Affiliation

    Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA. miwai@berkeley.edu.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 1193Physcomitrium patensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 5195Physcomitrium patensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 3208Physcomitrium patensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 7206Physcomitrium patensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 4221Physcomitrium patensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 9218Physcomitrium patensMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 8219Physcomitrium patensMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 2198Physcomitrium patensMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 6196Physcomitrium patensMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
PsaA743Physcomitrium patensMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 10223Physcomitrium patensMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
PsaB733Physcomitrium patensMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 11224Physcomitrium patensMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
PsaC80Physcomitrium patensMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll A/B binding protein 12225Physcomitrium patensMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
PsaD143Physcomitrium patensMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
PsaE66Physcomitrium patensMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
PsaF154Physcomitrium patensMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
PsaG97Physcomitrium patensMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
PsaH88Physcomitrium patensMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
PsaI30Physcomitrium patensMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
PsaJ42Physcomitrium patensMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
PsaK77Physcomitrium patensMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
PsaL157Physcomitrium patensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.4

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United States--
National Institutes of Health/National Institute of Biomedical Imaging and Bioengineering (NIH/NIBIB)United States1S10OD020062-01

Revision History  (Full details and data files)

  • Version 1.0: 2018-11-21
    Type: Initial release
  • Version 1.1: 2019-12-04
    Changes: Author supporting evidence
  • Version 1.2: 2024-03-13
    Changes: Database references