6M6R

Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 8-mer ssRNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain

Li, K.Zheng, J.Wirawan, M.Xiong, Z.Fedorova, O.Griffin, P.Plyle, A.Luo, D.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Dicer Related HelicaseB [auth A]170Caenorhabditis elegansMutation(s): 0 
Gene Names: drh-3CELE_D2005.5D2005.5
UniProt
Find proteins for Q93413 (Caenorhabditis elegans)
Explore Q93413 
Go to UniProtKB:  Q93413
Protein Feature View
Expand
  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3')A [auth B]8synthetic construct
    Protein Feature View
    Expand
    • Reference Sequence
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    ZN
    Query on ZN

    Download Ideal Coordinates CCD File 
    C [auth A]ZINC ION
    Zn
    PTFCDOFLOPIGGS-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.89 Å
    • R-Value Free: 0.221 
    • R-Value Work: 0.178 
    • R-Value Observed: 0.180 
    • Space Group: P 43 21 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 56.843α = 90
    b = 56.843β = 90
    c = 131.75γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    iMOSFLMdata reduction
    SCALAdata scaling
    SHELXphasing

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History  (Full details and data files)

    • Version 1.0: 2021-03-17
      Type: Initial release