6M3S

Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.177 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004

Zhu, G.P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isocitrate dehydrogenase
A, B
343Xanthomonas campestrisMutation(s): 0 
Gene Names: D0A35_19175TR80_00940XcmpCFBP7700_13825
EC: 1.1.1.41
UniProt
Find proteins for A0A0H2XBX7 (Xanthomonas campestris pv. campestris (strain 8004))
Explore A0A0H2XBX7 
Go to UniProtKB:  A0A0H2XBX7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H2XBX7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.177 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 143.735α = 90
b = 143.735β = 90
c = 65.289γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

  • Released Date: 2021-03-10 
  • Deposition Author(s): Zhu, G.P.

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-10
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Database references, Refinement description