6LCA

Crystal structure of human Dishevelled1 PDZ domain homotrimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.246 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of human Dishevelled1 PDZ domain homotrimer

Yasukochi, S.Numoto, N.Tenno, N.Tenno, T.Ito, N.Hiroaki, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Segment polarity protein dishevelled homolog DVL-1
A, B, C, D, E
A, B, C, D, E, F, G, H
102Homo sapiensMutation(s): 2 
Gene Names: DVL1
UniProt & NIH Common Fund Data Resources
Find proteins for O14640 (Homo sapiens)
Explore O14640 
Go to UniProtKB:  O14640
PHAROS:  O14640
GTEx:  ENSG00000107404 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14640
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.246 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 147.923α = 90
b = 147.923β = 90
c = 78.999γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-25
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description