6L4L

Crystal structure of S. aureus CntK in inactive state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

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This is version 1.0 of the entry. See complete history


Literature

Crystal structure of S. aureus CntK in inactive state

Ju, Y.Luo, S.Zhou, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Diaminopimelate epimeraseA281Staphylococcus aureusMutation(s): 0 
Gene Names: dapFcntKDB727_02910M1K003_1013
EC: 5.1.1.24
UniProt
Find proteins for A0A0H3JU78 (Staphylococcus aureus (strain Mu50 / ATCC 700699))
Explore A0A0H3JU78 
Go to UniProtKB:  A0A0H3JU78
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3JU78
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO (Subject of Investigation/LOI)
Query on EDO

Download Ideal Coordinates CCD File 
B [auth A],
C [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.748α = 90
b = 60.293β = 116.91
c = 76.991γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-10-18 
  • Released Date: 2020-10-21 
  • Deposition Author(s): Ju, Y., Luo, S., Zhou, H.

Funding OrganizationLocationGrant Number
National Science Foundation (China)China81773636
National Science Foundation (China)China81803435

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-21
    Type: Initial release