6KN2 | pdb_00006kn2

Structure of single disulfide peptide Czon1107-WT (major conformer)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 27 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6KN2

This is version 1.4 of the entry. See complete history

Literature

Structure and allosteric activity of a single-disulfide conopeptide fromConus zonatusat human alpha 3 beta 4 and alpha 7 nicotinic acetylcholine receptors.

Mohan, M.K.Abraham, N.R P, R.Jayaseelan, B.F.Ragnarsson, L.Lewis, R.J.Sarma, S.P.

(2020) J Biological Chem 295: 7096-7112

  • DOI: https://doi.org/10.1074/jbc.RA119.012098
  • Primary Citation Related Structures: 
    6KMY, 6KN2, 6KN3, 6KNO, 6KNP

  • PubMed Abstract: 

    Conopeptides are neurotoxic peptides in the venom of marine cone snails and have broad therapeutic potential for managing pain and other conditions. Here, we identified the single-disulfide peptides Czon1107 and Cca1669 from the venoms of Conus zonatus and Conus caracteristicus , respectively. We observed that Czon1107 strongly inhibits the human α3β4 (IC 50 15.7 ± 3.0 μm) and α7 (IC 50 77.1 ± 0.05 μm) nicotinic acetylcholine receptor (nAChR) subtypes, but the activity of Cca1669 remains to be identified. Czon1107 acted at a site distinct from the orthosteric receptor site. Solution NMR experiments revealed that Czon1107 exists in equilibrium between conformational states that are the result of a key Ser 4 -Pro 5 cis-trans isomerization. Moreover, we found that the X-Pro amide bonds in the inter-cysteine loop are rigidly constrained to cis conformations. Structure-activity experiments of Czon1107 and its variants at positions P5 and P7 revealed that the conformation around the X-Pro bonds ( cis-trans ) plays an important role in receptor subtype selectivity. The cis conformation at the Cys 6 -Pro 7 peptide bond was essential for α3β4 nAChR subtype allosteric selectivity. In summary, we have identified a unique single-disulfide conopeptide with a noncompetitive, potentially allosteric inhibitory mechanism at the nAChRs. The small size and rigidity of the Czon1107 peptide could provide a scaffold for rational drug design strategies for allosteric nAChR modulation. This new paradigm in the "conotoxinomic" structure-function space provides an impetus to screen venom from other Conus species for similar, short bioactive peptides that allosterically modulate ligand-gated receptor function.


  • Organizational Affiliation
    • Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka 560012, India.

Macromolecule Content 

  • Total Structure Weight: 1.11 kDa 
  • Atom Count: 77 
  • Modeled Residue Count: 11 
  • Deposited Residue Count: 11 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Czon1107-WT (Conformer A)11Conus zonatusMutation(s): 0 
UniProt
Find proteins for P0DQM9 (Conus zonatus)
Explore P0DQM9 
Go to UniProtKB:  P0DQM9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DQM9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 27 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (DBT, India)IndiaIISc Partnership Program

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-08
    Type: Initial release
  • Version 1.1: 2020-04-22
    Changes: Database references
  • Version 1.2: 2020-05-27
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Database references, Other
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary