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 6K73 | pdb_00006k73

Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free: 
    0.260 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.225 (Depositor), 0.238 (DCC) 
  • R-Value Observed: 
    0.227 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 6K73

Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history. 

Literature

Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis.

He, L.H., Wang, H., Liu, Y., Kang, M., Li, T., Li, C.C., Tong, A.P., Zhu, Y.B., Song, Y.J., Savarino, S.J., Prouty, M.G., Xia, D., Bao, R.

(2020) PLoS Pathog 16: e1008848-e1008848

  • DOI: https://doi.org/10.1371/journal.ppat.1008848
  • Primary Citation Related Structures: 
    6K73

  • PubMed Abstract: 

    Colonization factor CFA/I defines the major adhesive fimbriae of enterotoxigenic Escherichia coli and mediates bacterial attachment to host intestinal epithelial cells. The CFA/I fimbria consists of a tip-localized minor adhesive subunit, CfaE, and thousands of copies of the major subunit CfaB polymerized into an ordered helical rod. Biosynthesis of CFA/I fimbriae requires the assistance of the periplasmic chaperone CfaA and outer membrane usher CfaC. Although the CfaE subunit is proposed to initiate the assembly of CFA/I fimbriae, how it performs this function remains elusive. Here, we report the establishment of an in vitro assay for CFA/I fimbria assembly and show that stabilized CfaA-CfaB and CfaA-CfaE binary complexes together with CfaC are sufficient to drive fimbria formation. The presence of both CfaA-CfaE and CfaC accelerates fimbria formation, while the absence of either component leads to linearized CfaB polymers in vitro. We further report the crystal structure of the stabilized CfaA-CfaE complex, revealing features unique for biogenesis of Class 5 fimbriae.


  • Organizational Affiliation: 
    • Center of Infectious Diseases, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China.

Macromolecule Content 

  • Total Structure Weight: 126.88 kDa 
  • Atom Count: 8,432 
  • Modeled Residue Count: 1,061 
  • Deposited Residue Count: 1,124 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Colonization factor antigen I chaperone CfaA
A, B
221Escherichia coliMutation(s): 3 
Gene Names: D4V05_24280
UniProt
Find proteins for P25732 (Escherichia coli)
Explore P25732 
Go to UniProtKB:  P25732
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25732
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
CFA/I fimbrial subunit E
C, D
341Escherichia coliMutation(s): 0 
Gene Names: cfaE
UniProt
Find proteins for P25734 (Escherichia coli)
Explore P25734 
Go to UniProtKB:  P25734
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25734
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
(Subject of Investigation/LOI)

Query on GOL



Download:Ideal Coordinates CCD File
E [auth A],
I [auth C],
J [auth C],
K [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
NI
(Subject of Investigation/LOI)

Query on NI



Download:Ideal Coordinates CCD File
F [auth A],
G [auth B],
H [auth C],
L [auth C]
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.225 (Depositor), 0.238 (DCC) 
  • R-Value Observed: 0.227 (Depositor) 
Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 217.158α = 90
b = 217.158β = 90
c = 177.091γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXmodel building
HKL-2000data scaling
PHASERphasing
HKL-2000data collection
HKL-2000data reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (China)ChinaSQ2016YFJC040104

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-10
    Type: Initial release
  • Version 1.1: 2020-10-14
    Changes: Database references
  • Version 1.2: 2024-10-16
    Changes: Data collection, Database references, Structure summary