6K3I | pdb_00006k3i

Salmonella hook in curved state - 66 subunit models


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.86 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6K3I

This is version 1.3 of the entry. See complete history

Literature

Torque transmission mechanism of the curved bacterial flagellar hook revealed by cryo-EM.

Shibata, S.Matsunami, H.Aizawa, S.I.Wolf, M.

(2019) Nat Struct Mol Biol 26: 941-945

  • DOI: https://doi.org/10.1038/s41594-019-0301-3
  • Primary Citation Related Structures: 
    6K3I

  • PubMed Abstract: 

    Bacterial locomotion by rotating flagella is achieved through the hook, which transmits torque from the motor to the filament. The hook is a tubular structure composed of a single type of protein, yet it adopts a curved shape. To perform its function, it must be simultaneously flexible and torsionally rigid. The molecular mechanism by which chemically identical subunits form such a dynamic structure is unknown. Here, we show the complete structure of the hook from Salmonella enterica in its supercoiled 'curved' state, at 2.9 Å resolution. Subunits in the curved hook are grouped into 11 distinctive conformations, each shared along 11 protofilaments. The domains of the elongated hook subunit behave as rigid bodies connected by two hinge regions. The reconstituted model demonstrates how identical subunits can dynamically change conformation by physical interactions while bending. These multiple subunit states contradict the two-state model, which is a key feature of flagellar polymorphism.


  • Organizational Affiliation
    • Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.

Macromolecule Content 

  • Total Structure Weight: 2,778.73 kDa 
  • Atom Count: 195,294 
  • Modeled Residue Count: 26,532 
  • Deposited Residue Count: 26,532 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar hook protein FlgE402Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P0A1J1 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P0A1J1 
Go to UniProtKB:  P0A1J1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A1J1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.86 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.14-3260
RECONSTRUCTIONcisTEM1.0.1-beta

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Agency for Medical Research and Development (AMED)JapanJP18am0101076
Japan Society for the Promotion of ScienceJapan17K17085
Japan Society for the Promotion of ScienceJapan19K10083
Japan Society for the Promotion of ScienceJapan17K07318

Revision History  (Full details and data files)

  • Version 1.0: 2019-10-02
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-27
    Changes: Database references
  • Version 1.3: 2024-03-27
    Changes: Data collection, Database references, Refinement description