6JXA

Tel1 kinase compact monomer

  • Classification: TRANSFERASE
  • Organism(s): Saccharomyces cerevisiae S288C
  • Mutation(s): No 

  • Deposited: 2019-04-23 Released: 2019-07-03 
  • Deposition Author(s): Xin, J.
  • Funding Organization(s): National Basic Research Program of China(973 Program)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of allosteric regulation of Tel1/ATM kinase.

Xin, J.Xu, Z.Wang, X.Tian, Y.Zhang, Z.Cai, G.

(2019) Cell Res 29: 655-665

  • DOI: 10.1038/s41422-019-0176-1
  • Primary Citation of Related Structures:  
    6JXA, 6JXC

  • PubMed Abstract: 
  • ATM/Tel1 is an apical kinase that orchestrates the multifaceted DNA damage response. Mutations of ATM/Tel1 are associated with ataxia telangiectasia syndrome. Here, we report cryo-EM structures of symmetric dimer (4.1 Å) and asymmetric dimer (4.3 Å) of Saccharomyces cerevisiae Tel1 ...

    ATM/Tel1 is an apical kinase that orchestrates the multifaceted DNA damage response. Mutations of ATM/Tel1 are associated with ataxia telangiectasia syndrome. Here, we report cryo-EM structures of symmetric dimer (4.1 Å) and asymmetric dimer (4.3 Å) of Saccharomyces cerevisiae Tel1. In the symmetric state, the side chains in Tel1 C-terminus (residues 1129-2787) are discernible and an atomic model is built. The substrate binding groove is completely embedded in the symmetric dimer by the intramolecular PRD and intermolecular LID domains. Point mutations in these domains sensitize the S. cerevisiae cells to DNA damage agents and hinder Tel1 activation due to reduced binding affinity for its activator Xrs2/Nbs1. In the asymmetric state, one monomer becomes more compact in two ways: the kinase N-lobe moves down and the Spiral of α-solenoid moves upwards, which resemble the conformational changes observed in active mTOR. The accessibility of the activation loop correlates with the synergistic conformational disorders in the TRD1-TRD2 linker, FATC and PRD domains, where critical post-translational modifications and activating mutations are coincidently condensed. This study reveals a tunable allosteric network in ATM/Tel1, which is important for substrate recognition, recruitment and efficient phosphorylation.


    Organizational Affiliation

    Hefei National Laboratory for Physical Sciences at Microscale and CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Hefei, 230026, Anhui, China. gcai@ustc.edu.cn.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein kinase TEL1A2,787Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TEL1YBL088CYBL0706
EC: 2.7.11.1
UniProt
Find proteins for P38110 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38110 
Go to UniProtKB:  P38110
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38110
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2019-07-03 
  • Deposition Author(s): Xin, J.

Funding OrganizationLocationGrant Number
National Basic Research Program of China(973 Program)China--

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-03
    Type: Initial release
  • Version 1.1: 2019-08-14
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-06
    Changes: Data collection, Other