6JDB

Crystal structure of N-acetyl mannosmaine kinase in complex with ManNAc-6P and ADP from Haemophilus influenzae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Structure and Function of N‐Acetylmannosamine Kinases from Pathogenic Bacteria.

Thanuja, G.Ramaswamy, S.

(2020) ACS Omega 5: 30923-30926


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
N-acetylmannosamine kinase290Haemophilus influenzae 86-028NPMutation(s): 0 
Gene Names: nanK
EC: 2.7.1.60
UniProt
Find proteins for Q4QP43 (Haemophilus influenzae (strain 86-028NP))
Explore Q4QP43 
Go to UniProtKB:  Q4QP43
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4QP43
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.591α = 90
b = 92.591β = 90
c = 183.321γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (India)IndiaBT/IN/Sweden/06/SR/2017-18
Department of Biotechnology (India)IndiaBT/PR12422/MED/31/287/ 2014

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-05
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.2: 2020-12-16
    Changes: Database references, Structure summary
  • Version 1.3: 2023-11-22
    Changes: Data collection, Database references, Refinement description