6J9S

Penta mutant of Lactobacillus casei lactate dehydrogenase

PDB DOI: https://doi.org/10.2210/pdb6J9S/pdb
Entry: 6J9S supersedes: 3VKU

Classification: OXIDOREDUCTASE
Organism(s): Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-01-24 Released: 2019-02-06
Deposition Author(s): Arai, K., Miyanaga, A., Uchikoba, H., Fushinobu, S., Taguchi, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.234
R-Value Work: 0.209
R-Value Observed: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of penta mutant of L-lactate dehydrogenase from Lactobacillus casei

Arai, K., Miyanaga, A., Uchikoba, H., Fushinobu, S., Taguchi, H.

To be published.

Macromolecule Content

Total Structure Weight: 215.82 kDa
Atom Count: 14,730
Modelled Residue Count: 1,835
Deposited Residue Count: 1,956
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-lactate dehydrogenase	A, B, C, D, E A, B, C, D, E, F	326	Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393	Mutation(s): 5 Gene Names: ldh, LBCZ_2323 EC: 1.1.1.27
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain M [auth C] SDF format, chain N [auth C] SDF format, chain P [auth D] SDF format, chain Q [auth D] SDF format, chain S [auth E] SDF format, chain T [auth E] SDF format, chain W [auth F] SDF format, chain X [auth F] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain M [auth C] MOL2 format, chain N [auth C] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain S [auth E] MOL2 format, chain T [auth E] MOL2 format, chain W [auth F] MOL2 format, chain X [auth F]	G [auth A] H [auth A] I [auth B] J [auth B] M [auth C] G [auth A], H [auth A], I [auth B], J [auth B], M [auth C], N [auth C], P [auth D], Q [auth D], S [auth E], T [auth E], W [auth F], X [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain M [auth C] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain W [auth F] Focus chain X [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain M [auth C] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain W [auth F] Focus chain X [auth F]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain K [auth B] SDF format, chain L [auth B] SDF format, chain O [auth C] SDF format, chain R [auth D] SDF format, chain U [auth E] SDF format, chain V [auth E] SDF format, chain Y [auth F] MOL2 format, chain K [auth B] MOL2 format, chain L [auth B] MOL2 format, chain O [auth C] MOL2 format, chain R [auth D] MOL2 format, chain U [auth E] MOL2 format, chain V [auth E] MOL2 format, chain Y [auth F]	K [auth B] L [auth B] O [auth C] R [auth D] U [auth E] K [auth B], L [auth B], O [auth C], R [auth D], U [auth E], V [auth E], Y [auth F]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain K [auth B] Focus chain L [auth B] Focus chain O [auth C] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth E] Focus chain Y [auth F] Interactions & Density Focus chain K [auth B] Focus chain L [auth B] Focus chain O [auth C] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth E] Focus chain Y [auth F]