6IZB | pdb_00006izb

Flexible loop truncated human TCTP

PDB DOI: https://doi.org/10.2210/pdb6IZB/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-12-19 Released: 2019-12-25
Deposition Author(s): Shin, D.H., Kim, M.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.246 (Depositor), 0.241 (DCC)
R-Value Work:
0.220 (Depositor), 0.222 (DCC)
R-Value Observed:
0.221 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6IZB

This is version 1.1 of the entry. See complete history.

Literature

Flexible loop truncated human TCTP

Shin, D.H., Kim, M.S.

To be published.

Macromolecule Content

Total Structure Weight: 17.96 kDa
Atom Count: 1,307
Modeled Residue Count: 149
Deposited Residue Count: 153
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Translationally-controlled tumor protein	A	153	Homo sapiens	Mutation(s): 0 Gene Names: TPT1
UniProt & NIH Common Fund Data Resources
Find proteins for P13693 (Homo sapiens) Explore P13693 Go to UniProtKB: P13693
PHAROS: P13693 GTEx: ENSG00000133112
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P13693
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.246 (Depositor), 0.241 (DCC)
R-Value Work: 0.220 (Depositor), 0.222 (DCC)
R-Value Observed: 0.221 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.295	α = 90
b = 69.295	β = 90
c = 146.062	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data reduction
pointless	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2019-12-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-12-25
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.