6IQW

Cryo-EM structure of Csm effector complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cryo-EM structure of Type III-A CRISPR effector complex.

Huo, Y.Li, T.Wang, N.Dong, Q.Wang, X.Jiang, T.

(2018) Cell Res. 28: 1195-1197


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Csm1
A
777Thermococcus onnurineus (strain NA1)Mutation(s): 0 
Gene Names: csm1 (cas10)
EC: 3.1.-.-
Find proteins for B6YWB8 (Thermococcus onnurineus (strain NA1))
Go to UniProtKB:  B6YWB8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Csm2
B
196Thermococcus onnurineus (strain NA1)Mutation(s): 0 
Find proteins for B6YWB9 (Thermococcus onnurineus (strain NA1))
Go to UniProtKB:  B6YWB9
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Csm3
C, D
290Thermococcus onnurineus (strain NA1)Mutation(s): 0 
Find proteins for B6YWC0 (Thermococcus onnurineus (strain NA1))
Go to UniProtKB:  B6YWC0
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Csm4
E
289Thermococcus onnurineus (strain NA1)Mutation(s): 0 
Gene Names: csm4
Find proteins for B6YWC1 (Thermococcus onnurineus (strain NA1))
Go to UniProtKB:  B6YWC1
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Csm5
F
397Thermococcus onnurineus (strain NA1)Mutation(s): 0 
Find proteins for B6YWC2 (Thermococcus onnurineus (strain NA1))
Go to UniProtKB:  B6YWC2
Entity ID: 6
MoleculeChainsLengthOrganism
RNA (5'-R(*GP*UP*GP*GP*AP*AP*AP*GP*UP*GP*GP*CP*CP*CP*GP*AP*AP*AP*CP*CP*CP*UP*UP*C)-3')I24Thermococcus onnurineus NA1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
A
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB08010301
National Science Foundation (China)China31670750

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release