6IH0

Aquifex aeolicus LpxC complex with ACHN-975


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.165 

wwPDB Validation   3D Report Full Report



Literature

Aquifex aeolicus LpxC complex with ACHN-975

Li, D.Y.Fan, S.Jin, Y.Y.Zhang, C.Lv, G.X.Wu, G.T.Yang, Z.Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
UDP-3-O-acyl-N-acetylglucosamine deacetylaseA279Aquifex aeolicus VF5Mutation(s): 0 
Gene Names: lpxCenvAaq_1772
EC: 3.5.1.108
Find proteins for O67648 (Aquifex aeolicus (strain VF5))
Explore O67648 
Go to UniProtKB:  O67648
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A5F
Query on A5F

Download CCD File 
A
N-[(2S)-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta -1,3-diynyl]benzamide
C20 H23 N3 O4
GOCUUDXEOKIQRU-IXDOHACOSA-N
 Ligand Interaction
A5U
Query on A5U

Download CCD File 
A
methyl (2S)-2-azanyl-3-methyl-3-[(2-methylpropan-2-yl)oxycarbonylamino]butanoate
C11 H22 N2 O4
UTWVEOUYCGZORL-SSDOTTSWSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.165 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.569α = 90
b = 65.569β = 90
c = 131.595γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81761128016
Other governmentChinaCAMS Innovation Fund for Medical Sciences(2016-12M-3-012)
Other governmentChinaCAMS Innovation Fund for Medical Sciences(2016-12M-3-022)
National Natural Science Foundation of ChinaChina81621064

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release