Download MendeleyCrystal structure of the complex of the hydrolytic antibody Fab 9C10 and a transition-state analog
Tsuchiya, Y., Tada, T., Yamaguchi, A., Kumon, A., Tsumuraya, T., Fujii, I.To be published.
6IGU
Crystal structure of the hydrolytic antibody Fab 9C10
- PDB DOI: https://doi.org/10.2210/pdb6IGU/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Mutation(s): No
- Deposited: 2018-09-26 Released: 2019-10-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.237
- R-Value Work: 0.175
- R-Value Observed: 0.178
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| IMMUNOGLOBULIN 9C10 L CHAIN | A [auth L] | 219 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| IMMUNOGLOBULIN 9C10 H CHAIN | B [auth H] | 220 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTB Query on BTB | C [auth L], G [auth H] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N |  | Ligand Interaction | |
| PGE Query on PGE | D [auth H], E [auth H], F [auth H] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.237
- R-Value Work: 0.175
- R-Value Observed: 0.178
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 154.436 | α = 90 |
| b = 60.142 | β = 108.43 |
| c = 56.08 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2019-10-09 Deposition Author(s): Yamaguchi, A., Tada, T., Tsuchiya, Y., Tsumuraya, T., Fujii, I.
Revision History (Full details and data files)
- Version 1.0: 2019-10-09
Type: Initial release
