Download MendeleyComparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization
Prange, T., Carpentier, P., Dhaussy, A.C., Girard, E., Colloc'h, N.(2022) Acta Cryst D 78: 162-173
6IA9
urate oxidase under 2000 bar (220 MPa) of argon
- PDB DOI: https://doi.org/10.2210/pdb6IA9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aspergillus flavus
- Expression System: Komagataella pastoris
- Mutation(s): No
- Deposited: 2018-11-26 Released: 2019-12-18
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.243
- R-Value Work: 0.209
This is version 3.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uricase | A [auth aaa], B [auth aba] | 295 | Aspergillus flavus | Mutation(s): 0 Gene Names: uaZ, uox EC: 1.7.3.3 |  |
UniProt | |||||
Find proteins for Q00511 (Aspergillus flavus) Explore Q00511 Go to UniProtKB: Q00511 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q00511 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AZA (Subject of Investigation/LOI) Query on AZA | E [auth aaa], F [auth aaa], M [auth aba], N [auth aba] | 8-AZAXANTHINE C4 H3 N5 O2 KVGVQTOQSNJTJI-UHFFFAOYSA-N |  | ||
| ACE Query on ACE | C [auth aaa], I [auth aba] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N |  | ||
| AR Query on AR | G [auth aaa], H [auth aaa], K [auth aba], L [auth aba] | ARGON Ar XKRFYHLGVUSROY-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth aaa], J [auth aba] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.243
- R-Value Work: 0.209
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.552 | α = 90 |
| b = 96.682 | β = 90 |
| c = 105.579 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-12-18 Deposition Author(s): Prange, T., Colloc'h, N., Carpentier, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-12-18
Type: Initial release - Version 2.0: 2020-09-23
Type: Coordinate replacement
Reason: Model completeness
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Other, Polymer sequence, Refinement description, Source and taxonomy, Structure summary - Version 3.0: 2022-02-09
Type: Coordinate replacement
Reason: Model completeness
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Refinement description, Structure summary - Version 3.1: 2024-01-24
Changes: Data collection, Derived calculations, Refinement description
