6I7O

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.

Ikeuchi, K.Tesina, P.Matsuo, Y.Sugiyama, T.Cheng, J.Saeki, Y.Tanaka, K.Becker, T.Beckmann, R.Inada, T.

(2019) EMBO J 38

  • DOI: 10.15252/embj.2018100276
  • Primary Citation of Related Structures:  
    6I7O

  • PubMed Abstract: 
  • Ribosome stalling triggers quality control pathways targeting the mRNA (NGD: no-go decay) and the nascent polypeptide (RQC: ribosome-associated quality control). RQC requires Hel2-dependent uS10 ubiquitination and the RQT complex in yeast. Here, we report that Hel2-dependent uS10 ubiquitination and Slh1/Rqt2 are crucial for RQC and NGD induction within a di-ribosome (disome) unit, which consists of the leading stalled ribosome and the following colliding ribosome ...

    Ribosome stalling triggers quality control pathways targeting the mRNA (NGD: no-go decay) and the nascent polypeptide (RQC: ribosome-associated quality control). RQC requires Hel2-dependent uS10 ubiquitination and the RQT complex in yeast. Here, we report that Hel2-dependent uS10 ubiquitination and Slh1/Rqt2 are crucial for RQC and NGD induction within a di-ribosome (disome) unit, which consists of the leading stalled ribosome and the following colliding ribosome. Hel2 preferentially ubiquitinated a disome over a monosome on a quality control inducing reporter mRNA in an in vitro translation reaction. Cryo-EM analysis of the disome unit revealed a distinct structural arrangement suitable for recognition and modification by Hel2. The absence of the RQT complex or uS10 ubiquitination resulted in the elimination of NGD within the disome unit. Instead, we observed Hel2-mediated cleavages upstream of the disome, governed by initial Not4-mediated monoubiquitination of eS7 and followed by Hel2-mediated K63-linked polyubiquitination. We propose that Hel2-mediated ribosome ubiquitination is required both for canonical NGD (NGD RQC + ) and RQC coupled to the disome and that RQC-uncoupled NGD outside the disome (NGD RQC - ) can occur in a Not4-dependent manner.


    Organizational Affiliation

    Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai, Japan beckmann@genzentrum.lmu.de tinada@m.tohoku.ac.jp.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L2-A AWXW252Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX45 
Go to UniProtKB:  P0CX45
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L3 BAYA386Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14126 
Go to UniProtKB:  P14126
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L4-A BEYE361Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P10664 
Go to UniProtKB:  P10664
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L5 BIYI294Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P26321 
Go to UniProtKB:  P26321
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L6-A BMYM176Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q02326 
Go to UniProtKB:  Q02326
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L7-A BOYO223Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05737 
Go to UniProtKB:  P05737
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L8-A AAXA231Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P17076 
Go to UniProtKB:  P17076
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L9-A ADXD190Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05738 
Go to UniProtKB:  P05738
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L10 BDYD221Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P41805 
Go to UniProtKB:  P41805
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L11-B AGXG169Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q3E757 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q3E757 
Go to UniProtKB:  Q3E757
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L13-A AJXJ194Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12690 
Go to UniProtKB:  Q12690
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L14-A AMXM137Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36105 
Go to UniProtKB:  P36105
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L15-A AQXQ203Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05748 
Go to UniProtKB:  P05748
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L16-A AUXU197Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P26784 
Go to UniProtKB:  P26784
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S0-A PPb206Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32905 
Go to UniProtKB:  P32905
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S1-A QQb216Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P33442 
Go to UniProtKB:  P33442
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S2 RRb217Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25443 
Go to UniProtKB:  P25443
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S3 AAb223Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05750 
Go to UniProtKB:  P05750
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S4-A SSb260Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX35 
Go to UniProtKB:  P0CX35
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S5 BBb206Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P26783 
Go to UniProtKB:  P26783
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S6-A TTb218Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX37 
Go to UniProtKB:  P0CX37
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S7-A UUb185Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P26786 
Go to UniProtKB:  P26786
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S8-A VVb200Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX39 
Go to UniProtKB:  P0CX39
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S9-A WWb185Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore O13516 
Go to UniProtKB:  O13516
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S10-A CCb92Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08745 
Go to UniProtKB:  Q08745
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S11-A XXb146Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX47 
Go to UniProtKB:  P0CX47
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S12 DDb124Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P48589 
Go to UniProtKB:  P48589
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S13 YYb150Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05756 
Go to UniProtKB:  P05756
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S14-B ZZb128Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P39516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39516 
Go to UniProtKB:  P39516
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15 EEb119Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q01855 
Go to UniProtKB:  Q01855
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S16-A FFb141Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX51 
Go to UniProtKB:  P0CX51
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S17-A GGb125Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P02407 
Go to UniProtKB:  P02407
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S18-A HHb145Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX55 
Go to UniProtKB:  P0CX55
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S19-A IIb143Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P07280 
Go to UniProtKB:  P07280
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S20 JJb101Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38701 
Go to UniProtKB:  P38701
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S21-A aab87Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0C0V8 
Go to UniProtKB:  P0C0V8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S22-A bbb129Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0C0W1 
Go to UniProtKB:  P0C0W1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S23-A ccb144Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX29 
Go to UniProtKB:  P0CX29
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S24-A ddb134Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX31 
Go to UniProtKB:  P0CX31
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S25-A KKb69Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q3E792 
Go to UniProtKB:  Q3E792
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S26-B eeb97Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P39939 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39939 
Go to UniProtKB:  P39939
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S27-A ffb81Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P35997 
Go to UniProtKB:  P35997
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S28-A LLb63Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q3E7X9 
Go to UniProtKB:  Q3E7X9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S29-A MMb53Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P41057 
Go to UniProtKB:  P41057
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S30-A ggb60Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX33 
Go to UniProtKB:  P0CX33
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S31 NNb73Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05759 
Go to UniProtKB:  P05759
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-like protein OOb313Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38011 
Go to UniProtKB:  P38011
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L17-A AXXX184Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05740 
Go to UniProtKB:  P05740
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L18-A BBYB185Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX49 
Go to UniProtKB:  P0CX49
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L19-A BFYF188Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX82 
Go to UniProtKB:  P0CX82
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L20-A BHYH172Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX23 
Go to UniProtKB:  P0CX23
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L21-A BJYJ159Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q02753 
Go to UniProtKB:  Q02753
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L22-A BLYL98Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05749 
Go to UniProtKB:  P05749
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L23-A ABXB134Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX41 
Go to UniProtKB:  P0CX41
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L24-A AEXE135Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P04449 
Go to UniProtKB:  P04449
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L25 AHXH120Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P04456 
Go to UniProtKB:  P04456
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L26-A AKXK124Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05743 
Go to UniProtKB:  P05743
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L27-A ANXN135Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0C2H6 
Go to UniProtKB:  P0C2H6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L28 ARXR148Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P02406 
Go to UniProtKB:  P02406
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L29 AVXV58Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05747 
Go to UniProtKB:  P05747
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L30 AYXY100Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14120 
Go to UniProtKB:  P14120
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L31-A BCYC109Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0C2H8 
Go to UniProtKB:  P0C2H8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L32 BGYG127Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38061 
Go to UniProtKB:  P38061
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L33-A BKYK106Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05744 
Go to UniProtKB:  P05744
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L34-A BNYN112Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P87262 
Go to UniProtKB:  P87262
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L35-A BPYP119Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX84 
Go to UniProtKB:  P0CX84
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L36-A ACXC99Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05745 
Go to UniProtKB:  P05745
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L37-A AFXF82Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P49166 
Go to UniProtKB:  P49166
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L38 AIXI77Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P49167 
Go to UniProtKB:  P49167
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L39 ALXL50Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P04650 
Go to UniProtKB:  P04650
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40 AOXO52Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CH08 
Go to UniProtKB:  P0CH08
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L41-B ASXS25Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX87 
Go to UniProtKB:  P0CX87
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L42-A APXP105Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX27 
Go to UniProtKB:  P0CX27
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L43-A ATXT91Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX25 
Go to UniProtKB:  P0CX25
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetailsImage
60S acidic ribosomal protein P0 BUYU312Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05317 
Go to UniProtKB:  P05317
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
25S ribosomal RNABQ, YQ3396Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
5S ribosomal RNABR, YR121Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsLengthOrganismImage
5.8S ribosomal RNABS, YS157Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 18
MoleculeChainsLengthOrganismImage
18S ribosomal RNA2, 2b1800Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 80
MoleculeChainsLengthOrganismImage
P-site tRNAn76Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 81
MoleculeChainsLengthOrganismImage
E-site tRNAm75Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 82
MoleculeChainsLengthOrganismImage
A/P hybrid tRNAnb76Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 83
MoleculeChainsLengthOrganismImage
P/E hybrid tRNAmb77Saccharomyces cerevisiae
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 84
MoleculeChainsLengthOrganismImage
mRNAl57Saccharomyces cerevisiae
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyFOR1805
German Research FoundationGermanyBE1814/15-1
Japan Society for the Promotion of ScienceJapan26116003

Revision History  (Full details and data files)

  • Version 1.0: 2019-01-16
    Type: Initial release
  • Version 1.1: 2019-03-13
    Changes: Data collection, Database references