6HT6

Crystal structure of glutathione transferase Omega 2S from Trametes versicolor in complex with 2,4-dihydroxybenzophenone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.224 

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This is version 1.1 of the entry. See complete history


Literature

Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor.

Schwartz, M.Perrot, T.Aubert, E.Dumarcay, S.Favier, F.Gerardin, P.Morel-Rouhier, M.Mulliert, G.Saiag, F.Didierjean, C.Gelhaye, E.

(2018) Sci Rep 8: 8472-8472

  • DOI: https://doi.org/10.1038/s41598-018-26601-3
  • Primary Citation of Related Structures:  
    6F43, 6F4B, 6F4F, 6F4K, 6F51, 6F66, 6F67, 6F68, 6F69, 6F6A, 6F70, 6F71, 6HT6

  • PubMed Abstract: 

    Wood decay fungi have complex detoxification systems that enable them to cope with secondary metabolites produced by plants. Although the number of genes encoding for glutathione transferases is especially expanded in lignolytic fungi, little is known about their target molecules. In this study, by combining biochemical, enzymatic and structural approaches, interactions between polyphenols and six glutathione transferases from the white-rot fungus Trametes versicolor have been demonstrated. Two isoforms, named TvGSTO3S and TvGSTO6S have been deeply studied at the structural level. Each isoform shows two distinct ligand-binding sites, a narrow L-site at the dimer interface and a peculiar deep hydrophobic H-site. In TvGSTO3S, the latter appears optimized for aromatic ligand binding such as hydroxybenzophenones. Affinity crystallography revealed that this H-site retains the flavonoid dihydrowogonin from a partially purified wild-cherry extract. Besides, TvGSTO6S binds two molecules of the flavonoid naringenin in the L-site. These data suggest that TvGSTO isoforms could interact with plant polyphenols released during wood degradation.


  • Organizational Affiliation

    Université de Lorraine, INRA, IAM, Nancy, France. eric.gelhaye@univ-lorraine.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase omega 2S
A, B
245Trametes versicolorMutation(s): 0 
UniProt
Find proteins for A0A452CSY5 (Trametes versicolor)
Explore A0A452CSY5 
Go to UniProtKB:  A0A452CSY5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A452CSY5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.224 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.999α = 90
b = 93.128β = 90
c = 95.548γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-11-LAS-0002-01

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2024-01-24
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary