The ATAD2 bromodomain in complex with compound 8

Experimental Data Snapshot

  • Resolution: 1.59 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report

This is version 1.1 of the entry. See complete history


Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers.

Dolbois, A.Batiste, L.Wiedmer, L.Dong, J.Brutsch, M.Huang, D.Deerain, N.M.Spiliotopoulos, D.Cheng-Sanchez, I.Laul, E.Nevado, C.Sledz, P.Caflisch, A.

(2020) ACS Med Chem Lett 11: 1573-1580

  • DOI: https://doi.org/10.1021/acsmedchemlett.0c00080
  • Primary Citation of Related Structures:  
    5F36, 6EPJ, 6EPT, 6EPU, 6EPV, 6EPX, 6HI3, 6HI4, 6HI5, 6HI6, 6HI7, 6HI8, 6HIA, 6HIB, 6HIC, 6HID, 6HIE

  • PubMed Abstract: 

    Small molecule ligand binding to the ATAD2 bromodomain is investigated here through the synergistic combination of molecular dynamics and protein crystallography. A previously unexplored conformation of the binding pocket upon rearrangement of the gatekeeper residue Ile1074 has been found. Further, our investigations reveal how minor structural differences in the ligands result in binding with different plasticity of the ZA loop for this difficult-to-drug bromodomain.

  • Organizational Affiliation

    Department of Chemistry and Department of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATPase family AAA domain-containing protein 2130Homo sapiensMutation(s): 0 
Gene Names: ATAD2L16PRO2000
EC: 3.6.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PL18 (Homo sapiens)
Explore Q6PL18 
Go to UniProtKB:  Q6PL18
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6PL18
Sequence Annotations
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Resolution: 1.59 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.322α = 90
b = 79.322β = 90
c = 136.484γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-20
    Type: Initial release
  • Version 1.1: 2020-11-04
    Changes: Database references