High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
Salinger, M.T., Hobbs, J.R., Murray, J.W., Laver, W.G., Kuhn, P., Garman, E.F.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neuraminidase | A, B, C, D | 389 | Influenza A virus (A/duck/England/1/1956(H11N6)) | Mutation(s): 0  Gene Names: NA EC: 3.2.1.18 | ![]() |
UniProt | |||||
Find proteins for Q6XV27 (Influenza A virus (strain A/Duck/England/1/1956 H11N6)) Explore Q6XV27  Go to UniProtKB:  Q6XV27 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6XV27 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, F, H, J, K, N E, F, H, J, K, N | 2 | N-Glycosylation | Oligosaccharides Interaction | |
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 3 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G | 8 | N-Glycosylation | Oligosaccharides Interaction | |
Glycosylation Resources | |||||
GlyTouCan:  G80966KZ GlyCosmos:  G80966KZ GlyGen:  G80966KZ |
Entity ID: 4 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | I | 7 | N-Glycosylation | Oligosaccharides Interaction | |
Glycosylation Resources | |||||
GlyTouCan:  G55220VL GlyCosmos:  G55220VL GlyGen:  G55220VL |
Entity ID: 5 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | L, M | 6 | N-Glycosylation | Oligosaccharides Interaction | |
Glycosylation Resources | |||||
GlyTouCan:  G94106MV GlyCosmos:  G94106MV GlyGen:  G94106MV |
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | CB [auth D], Y [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
PEG Query on PEG | AB [auth C], BB [auth C], HA [auth B], IA [auth B], JA [auth B], | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | Ligand Interaction | ||
PO4 Query on PO4 | GA [auth B], V [auth A], W [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | Ligand Interaction | ||
GOL Query on GOL | AA [auth B], BA [auth B], CA [auth B], DA [auth B], DB [auth D], | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
CA Query on CA | FA [auth B], IB [auth D], U [auth A], XA [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 106.2 | α = 90 |
b = 73.9 | β = 90.3 |
c = 106.4 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
REFMAC | phasing |
Funding Organization | Location | Grant Number |
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United Kingdom | -- |