6H8Q

Structural basis for Scc3-dependent cohesin recruitment to chromatin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.63 Å
  • R-Value Free: 0.319 
  • R-Value Work: 0.283 
  • R-Value Observed: 0.285 

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This is version 1.1 of the entry. See complete history


Literature

Structural basis for Scc3-dependent cohesin recruitment to chromatin.

Li, Y.Muir, K.Bowler, M.W.Metz, J.Haering, C.H.Panne, D.

(2018) Elife 7

  • DOI: https://doi.org/10.7554/eLife.38356
  • Primary Citation of Related Structures:  
    6H8Q

  • PubMed Abstract: 

    The cohesin ring complex is required for numerous chromosomal transactions including sister chromatid cohesion, DNA damage repair and transcriptional regulation. How cohesin engages its chromatin substrate has remained an unresolved question. We show here, by determining a crystal structure of the budding yeast cohesin HEAT-repeat subunit Scc3 bound to a fragment of the Scc1 kleisin subunit and DNA, that Scc3 and Scc1 form a composite DNA interaction module. The Scc3-Scc1 subcomplex engages double-stranded DNA through a conserved, positively charged surface. We demonstrate that this conserved domain is required for DNA binding by Scc3-Scc1 in vitro, as well as for the enrichment of cohesin on chromosomes and for cell viability. These findings suggest that the Scc3-Scc1 DNA-binding interface plays a central role in the recruitment of cohesin complexes to chromosomes and therefore for cohesin to faithfully execute its functions during cell division.


  • Organizational Affiliation

    European Molecular Biology Laboratory, Grenoble, France.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cohesin subunit SCC3
A, B
1,150Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: IRR1SCC3YIL026C
UniProt
Find proteins for P40541 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P40541
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UniProt GroupP40541
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 1C [auth G],
D [auth H]
100Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MCD1PDS3RHC21SCC1YDL003WYD8119.04
UniProt
Find proteins for Q12158 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12158 
Go to UniProtKB:  Q12158
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12158
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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (5'-D(P*CP*TP*TP*TP*CP*GP*TP*TP*TP*CP*CP*TP*TP*GP*AP*AP*AP*AP*A)-3')19Homo sapiens
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  • Reference Sequence

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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (5'-D(P*CP*TP*TP*TP*CP*GP*TP*TP*TP*CP*CP*TP*TP*GP*AP*AP*AP*AP*A)-3')19Homo sapiens
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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*TP*TP*TP*TP*CP*AP*AP*GP*GP*AP*AP*AP*CP*GP*AP*AP*AP*G)-3')G [auth C]19Homo sapiens
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (5'-D(P*CP*TP*TP*TP*CP*GP*TP*TP*TP*CP*CP*TP*TP*GP*AP*AP*AP*AP*A)-3')H [auth D]19Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.63 Å
  • R-Value Free: 0.319 
  • R-Value Work: 0.283 
  • R-Value Observed: 0.285 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 296.24α = 90
b = 110.02β = 90
c = 115.16γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Refinement description