6H8B

Molybdenum storage protein prepared under in vivo-like conditions and incubated with ATP and molybdate at 303 K


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The molybdenum storage protein - A bionanolab for creating experimentally alterable polyoxomolybdate clusters.

Brunle, S.Poppe, J.Hail, R.Demmer, U.Ermler, U.

(2018) J. Inorg. Biochem. 189: 172-179


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Molybdenum storage protein subunit beta
B
269Azotobacter vinelandii (strain DJ / ATCC BAA-1303)Mutation(s): 0 
Gene Names: mosB
Find proteins for P84253 (Azotobacter vinelandii (strain DJ / ATCC BAA-1303))
Go to UniProtKB:  P84253
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Molybdenum storage protein subunit alpha
A
275Azotobacter vinelandii (strain DJ / ATCC BAA-1303)Mutation(s): 0 
Gene Names: mosA
Find proteins for P84308 (Azotobacter vinelandii (strain DJ / ATCC BAA-1303))
Go to UniProtKB:  P84308
Small Molecules
Ligands 10 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

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A
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
J7Q
Query on J7Q

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A
tetrakis($l^{1}-oxidanyl)-[[2,2,2,4,4,4,4,6,6,6,8-undecakis($l^{1}-oxidanyl)-8-(oxidanylmolybdeniooxy)-6-[tris($l^{1}-oxidanyl)molybdeniooxy]-1,3,5,7-tetraoxa-2$l^{6},4$l^{6},6$l^{6},8$l^{4}-tetramolybdacyclooct-2-yl]oxy]molybdenum
H Mo7 O26
JETHCXFIMFVFFB-UHFFFAOYSA-A
 Ligand Interaction
J7N
Query on J7N

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B
2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane
H3 Mo2 O5
AUVZZTGQIKYYRK-UHFFFAOYSA-K
 Ligand Interaction
J8B
Query on J8B

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A
Molybdate cluster
Mo8 O26
VDJFCWAFEZEUOL-UHFFFAOYSA-A
 Ligand Interaction
MOO
Query on MOO

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A
MOLYBDATE ION
MOLYBDATE
Mo O4
MEFBJEMVZONFCJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
J85
Query on J85

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A
[[[bis(oxidanylmolybdenio)-$l^{3}-oxidanyl]-$l^{1}-oxidanyl-oxidanylidene-molybdenio]-(oxidanylmolybdenio)-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)molybdenum
H3 Mo5 O11
VWFFRZIWORKLLY-UHFFFAOYSA-F
 Ligand Interaction
J8E
Query on J8E

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B
oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum
H2 Mo4 O10
DPQAEXIBFYBKAN-UHFFFAOYSA-G
 Ligand Interaction
FUQ
Query on FUQ

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B
Mo5 Cluster
H20 Mo5 O25
KKTGFJKWMBVMER-UHFFFAOYSA-A
 Ligand Interaction
J7T
Query on J7T

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Download CCD File 
B
molybdate cluster
Mo9 O31
OPVBNKHERKYGEI-UHFFFAOYSA-A
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.234 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 116.720α = 90.00
b = 116.720β = 90.00
c = 235.420γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
PHENIXphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-02 
  • Released Date: 2019-02-20 
  • Deposition Author(s): Ermler, U., Poppe, J.

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release
  • Version 1.1: 2019-03-06
    Type: Data collection