6GZL

Complex between the dynein light chain DYNLL1/DLC8 and a peptide from the large myelin-associated glycoprotein L-MAG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.953 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

High-affinity heterotetramer formation between the large myelin-associated glycoprotein and the dynein light chain DYNLL1.

Myllykoski, M.Eichel, M.A.Jung, R.B.Kelm, S.Werner, H.B.Kursula, P.

(2018) J. Neurochem. 147: 764-783


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dynein light chain 1, cytoplasmic
A
90Homo sapiensMutation(s): 0 
Gene Names: DYNLL1 (DLC1, DNCL1, DNCLC1, HDLC1)
Find proteins for P63167 (Homo sapiens)
Go to Gene View: DYNLL1
Go to UniProtKB:  P63167
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PRO-THR-LYS-ASP-SER-TYR-THR-LEU-THR-GLU-GLU-LEU
B
17Mus musculusMutation(s): 0 
Gene Names: Mag
Find proteins for P20917 (Mus musculus)
Go to UniProtKB:  P20917
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.953 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.212 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 43.730α = 90.00
b = 43.730β = 90.00
c = 205.390γ = 120.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2019-01-09
    Type: Data collection, Database references