6GP9

Structural studies of hepatitis C virus non-structural protein-5b of genotype 4a

PDB DOI: https://doi.org/10.2210/pdb6GP9/pdb

Classification: TRANSFERASE
Organism(s): Hepacivirus hominis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-06-05 Released: 2020-09-30
Deposition Author(s): Janowski, R., Geber, H., Protzer, U., Niessing, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.257
R-Value Work: 0.202
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural studies of hepatitis C virus non-structural protein-5b of genotype 4a

Gaber, H., Niessing, D., Protzer, U., Janowski, R.

(2022) Biorxiv

DOI: https://doi.org/10.1101/2022.04.06.486972

Macromolecule Content

Total Structure Weight: 64.05 kDa
Atom Count: 4,340
Modelled Residue Count: 553
Deposited Residue Count: 575
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	A	575	Hepacivirus hominis	Mutation(s): 0 EC: 2.7.7.48
UniProt
Find proteins for Q506M7 (Hepacivirus C) Explore Q506M7 Go to UniProtKB: Q506M7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q506M7
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.257
R-Value Work: 0.202
R-Value Observed: 0.205
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.29	α = 90
b = 87.05	β = 90
c = 96.72	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2020-09-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-09-30
Type: Initial release
Version 1.1: 2022-04-13
Changes: Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.