6GMC

1.2 A resolution structure of human hydroxyacid oxidase 1 bound with FMN and 4-carboxy-5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.155 
  • R-Value Work: 0.134 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Structure of human hydroxyacid oxidase 1 bound with FMN and glycolate

MacKinnon, S.Bezerra, G.A.Krojer, T.Smee, C.Arrowsmith, C.H.Edwards, E.Bountra, C.Oppermann, U.Brennan, P.E.Yue, W.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hydroxyacid oxidase 1
A
368Homo sapiensMutation(s): 0 
Gene Names: HAO1 (GOX1, HAOX1)
EC: 1.1.3.15
Find proteins for Q9UJM8 (Homo sapiens)
Go to Gene View: HAO1
Go to UniProtKB:  Q9UJM8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
C7C
Query on C7C

Download SDF File 
Download CCD File 
A
5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole-4-carboxylate
C9 H4 Cl N2 O2 S2
NDYKFFAREALEPX-UHFFFAOYSA-M
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.155 
  • R-Value Work: 0.134 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 97.348α = 90.00
b = 97.348β = 90.00
c = 80.363γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
SCALAdata scaling
REFMACrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom106169/ZZ14/Z

Revision History 

  • Version 1.0: 2018-06-13
    Type: Initial release
  • Version 2.0: 2018-06-27
    Type: Atomic model, Data collection, Derived calculations